Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MIS33_RS00685 Genome accession   NZ_CP092359
Coordinates   118385..119587 (+) Length   400 a.a.
NCBI ID   WP_249447010.1    Uniprot ID   -
Organism   Wielerella bovis strain 08LB461     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 113385..124587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS33_RS00665 (MIS33_00665) ffh 113958..115322 (+) 1365 WP_249442777.1 signal recognition particle protein -
  MIS33_RS00670 (MIS33_00670) - 115502..116119 (-) 618 WP_249447007.1 inner membrane CreD family protein -
  MIS33_RS00675 (MIS33_00675) - 116436..117113 (+) 678 WP_249447008.1 response regulator -
  MIS33_RS00680 (MIS33_00680) - 117107..118075 (+) 969 WP_249447009.1 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  MIS33_RS00685 (MIS33_00685) dprA 118385..119587 (+) 1203 WP_249447010.1 DNA-processing protein DprA Machinery gene
  MIS33_RS00690 (MIS33_00690) tsf 119994..120848 (-) 855 WP_249442782.1 translation elongation factor Ts -
  MIS33_RS00695 (MIS33_00695) rpsB 120933..121661 (-) 729 WP_249447011.1 30S ribosomal protein S2 -
  MIS33_RS00700 (MIS33_00700) - 121934..123112 (+) 1179 WP_249442784.1 phosphoglycerate kinase -
  MIS33_RS00705 (MIS33_00705) radA 123200..124582 (+) 1383 WP_249447013.1 DNA repair protein RadA Machinery gene

Sequence


Protein


Download         Length: 400 a.a.        Molecular weight: 42599.49 Da        Isoelectric Point: 6.7329

>NTDB_id=656711 MIS33_RS00685 WP_249447010.1 118385..119587(+) (dprA) [Wielerella bovis strain 08LB461]
MTESERYVWLQLAFTPYVGAETFVQLLAAFGTPQAALNAPADAISQQGKHAKQAAAKWHDTTLARQATDAALTWAQQDGC
RLMLSCDDDYPALLAEGITAPPVLFLRGNTALLHQTSVGIVGSRHATPQAMRIAQDFGRALSEHNITVISGMAAGIDTAA
HIGALCGAGSTIAVWGTGIDRIYPASNQKLARDIADKGLIISEFPLETRPLAGNFPRRNRIIAAQSHAVLVVEAALESGS
LITARQAAEMGRDVMAIPGSIDNPHSKGCHKLIKEGAKLVECLDDILSELGHILPDKAYPQFSGSLKTSVKAHTKHNLST
KISTNPVMINNASFQAASTPITTIDTAHSLLQQMGYDPVHPDTLAANSSLSASDIYALLTEWELEGIVASLAGGRYQRIK

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=656711 MIS33_RS00685 WP_249447010.1 118385..119587(+) (dprA) [Wielerella bovis strain 08LB461]
ATGACCGAATCCGAACGCTACGTATGGTTACAACTGGCTTTCACGCCCTATGTTGGCGCAGAAACTTTTGTACAGTTGCT
GGCAGCATTTGGTACACCGCAAGCGGCTTTGAATGCGCCAGCCGATGCCATCTCGCAGCAAGGCAAACACGCCAAACAAG
CAGCAGCAAAATGGCACGACACCACGTTGGCACGACAAGCAACCGATGCCGCGCTGACTTGGGCGCAACAAGATGGTTGC
CGTTTGATGTTGTCTTGCGATGACGATTATCCTGCGCTATTGGCGGAAGGCATCACTGCGCCACCCGTATTATTTTTGCG
TGGCAATACGGCATTGTTACATCAAACATCGGTTGGCATAGTCGGTAGTCGCCACGCGACACCACAAGCCATGCGGATTG
CCCAAGATTTTGGTAGGGCATTGAGTGAACACAATATTACGGTTATTTCAGGCATGGCAGCAGGCATTGATACCGCCGCG
CATATTGGCGCATTGTGTGGCGCAGGCAGCACGATTGCCGTATGGGGAACAGGCATTGACCGCATTTATCCCGCATCCAA
CCAAAAATTGGCACGCGACATTGCCGACAAAGGTTTGATTATTTCCGAATTTCCGTTGGAAACCCGTCCATTGGCAGGTA
ATTTTCCGCGCCGCAACCGCATCATTGCCGCGCAAAGCCACGCCGTTTTGGTGGTGGAAGCCGCATTGGAAAGTGGTTCG
TTGATTACTGCCAGACAAGCCGCCGAAATGGGGCGCGATGTGATGGCAATCCCCGGTTCCATAGACAATCCACATAGTAA
AGGCTGCCACAAACTCATCAAAGAAGGGGCAAAATTGGTGGAATGCTTGGACGATATTTTGAGTGAATTGGGACATATTT
TGCCTGATAAGGCTTATCCACAGTTTTCAGGCAGCCTGAAAACCTCTGTTAAAGCGCATACTAAACACAATTTATCCACA
AAAATATCCACAAATCCTGTGATGATAAATAATGCCAGTTTTCAGGCTGCCTCTACGCCCATTACAACAATAGATACGGC
TCATTCCTTGTTGCAACAAATGGGCTACGACCCTGTTCATCCCGATACTTTGGCAGCAAATAGCTCATTATCTGCCAGCG
ATATTTATGCCTTGCTGACAGAATGGGAATTGGAAGGAATTGTGGCAAGTTTAGCAGGTGGACGCTATCAACGAATTAAA
TAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

59.305

100

0.597

  dprA Neisseria meningitidis MC58

59.305

100

0.597

  dprA Neisseria gonorrhoeae strain FA1090

58.313

100

0.588

  dprA Neisseria gonorrhoeae MS11

58.313

100

0.588

  dprA Glaesserella parasuis strain SC1401

38.071

98.5

0.375