Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MIS33_RS00705 Genome accession   NZ_CP092359
Coordinates   123200..124582 (+) Length   460 a.a.
NCBI ID   WP_249447013.1    Uniprot ID   -
Organism   Wielerella bovis strain 08LB461     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118200..129582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS33_RS00685 (MIS33_00685) dprA 118385..119587 (+) 1203 WP_249447010.1 DNA-processing protein DprA Machinery gene
  MIS33_RS00690 (MIS33_00690) tsf 119994..120848 (-) 855 WP_249442782.1 translation elongation factor Ts -
  MIS33_RS00695 (MIS33_00695) rpsB 120933..121661 (-) 729 WP_249447011.1 30S ribosomal protein S2 -
  MIS33_RS00700 (MIS33_00700) - 121934..123112 (+) 1179 WP_249442784.1 phosphoglycerate kinase -
  MIS33_RS00705 (MIS33_00705) radA 123200..124582 (+) 1383 WP_249447013.1 DNA repair protein RadA Machinery gene
  MIS33_RS00710 (MIS33_00710) - 124712..125131 (+) 420 WP_249442785.1 SMI1/KNR4 family protein -
  MIS33_RS00715 (MIS33_00715) - 125188..126207 (-) 1020 WP_249447014.1 IS110 family transposase -
  MIS33_RS00720 (MIS33_00720) - 126612..126908 (+) 297 Protein_136 transposase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49516.18 Da        Isoelectric Point: 6.6883

>NTDB_id=656712 MIS33_RS00705 WP_249447013.1 123200..124582(+) (radA) [Wielerella bovis strain 08LB461]
MAKAPKTVYQCTECGGTSPKWVGKCPHCGEWNTLQENIAAPEPKNARFQSWAAETTQVQALSQVTAMEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKTRNVLYISGEESAQQVALRAQRLGLNAEGVNLLAEIRLEAIQAA
LKQHAPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNHRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGTRPLLVEIQSLVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIGEPAADLAAVLAMVSSFRNKPLPEKMVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANMPRNENEFPKLKIYGVESLQEAVMLCRDLVDE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=656712 MIS33_RS00705 WP_249447013.1 123200..124582(+) (radA) [Wielerella bovis strain 08LB461]
ATGGCAAAAGCCCCCAAAACCGTCTATCAATGCACCGAATGCGGCGGCACATCGCCCAAATGGGTCGGCAAATGCCCCCA
TTGTGGCGAATGGAACACGCTACAAGAAAACATCGCGGCCCCCGAACCCAAAAACGCCCGTTTCCAATCATGGGCAGCCG
AAACGACACAAGTCCAAGCCCTATCCCAAGTTACCGCCATGGAAGTGCCACGCGAAGCCACAGGCATGGGCGAATTAGAC
CGCGTTTTGGGTGGCGGTTTGGTGGACGGAGCGGTAATTTTATTGGGTGGCGACCCTGGCATTGGCAAATCCACCTTATT
GTTACAAACCATTGCTTTAATGGCGAAAACGCGCAATGTTTTGTACATTTCAGGCGAAGAATCTGCGCAACAAGTCGCCC
TACGCGCCCAACGTTTGGGCTTGAATGCGGAAGGCGTGAATTTGCTTGCCGAAATCCGTTTGGAAGCCATTCAGGCAGCC
TTAAAGCAACACGCGCCCAGCGTGGTCGTGATTGACTCCATTCAAACTATGTATTCCGACCAAATCACGTCTGCCCCAGG
TTCCGTGTCGCAAGTGCGCGAATGTGCCGCCCAACTCACGCGCATCGCCAAACAAATGGGCATCGCCATGATTTTTGTCG
GACACGTTACCAAAGACGGTGCGATTGCGGGCCCGCGCGTGTTGGAACACATGGTAGACACCGTGTTGTATTTTGAAGGC
GACCAGCATTCCAATCATCGCATGATACGCGCGATTAAAAACCGCTTTGGCGCGGCAAACGAATTGGGCGTGTTCGCCAT
GACCGAAACGGGTTTGAAAGGCGTGTCCAATCCGTCCGCGATTTTTTTGGCGAGTTATCGGGACGATGTGGCGGGTTCGT
GCGTGTTGGTAACGCAGGAAGGGACGCGCCCATTATTAGTGGAAATTCAATCGCTTGTAGATGACGCACACGGTTTCACG
CCTAAACGCTTAACAGTCGGTTTGGAGCAAAACCGTTTGGCGATGTTGCTGGCGGTGCTGAACCGTCATGCGGGCATTGC
CTGTTTTGACCAAGACGTGTTTTTGAACGCGGTGGGCGGCGTGAAAATTGGCGAACCTGCGGCGGATTTGGCGGCGGTGT
TGGCGATGGTGTCCAGTTTCAGAAACAAGCCGCTGCCTGAAAAAATGGTGGCGTTTGGCGAAATCGGTTTGAGTGGCGAA
ATCCGCCCCGTGCCGCGCGGTCAGGAGCGTTTGAAAGAGGCGGAAAAATTGGGTTTCAAACGCGCCATTGTGCCGAAAGC
GAATATGCCGCGCAATGAAAACGAGTTCCCCAAATTAAAAATTTATGGCGTGGAAAGTTTGCAAGAAGCGGTTATGTTGT
GTCGGGATTTAGTTGATGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

99.13

0.507
  radA Streptococcus pneumoniae Rx1

48.009

98.261

0.472
  radA Streptococcus pneumoniae D39

48.009

98.261

0.472
  radA Streptococcus pneumoniae R6

48.009

98.261

0.472
  radA Streptococcus pneumoniae TIGR4

48.009

98.261

0.472
  radA Streptococcus mitis SK321

47.692

98.913

0.472
  radA Streptococcus mitis NCTC 12261

47.473

98.913

0.47