Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ANG_RS08745 Genome accession   NZ_AP013072
Coordinates   1740487..1741152 (-) Length   221 a.a.
NCBI ID   WP_025271933.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735487..1746152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS08715 (ANG_1773) rlmN 1735791..1736873 (-) 1083 WP_025271931.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ANG_RS08720 (ANG_1774) - 1736907..1737470 (-) 564 WP_003035207.1 YutD family protein -
  ANG_RS08725 (ANG_1775) sepM 1737608..1738663 (-) 1056 WP_021001375.1 SepM family pheromone-processing serine protease Regulator
  ANG_RS08730 (ANG_1776) coaD 1738644..1739141 (-) 498 WP_003025749.1 pantetheine-phosphate adenylyltransferase -
  ANG_RS08735 (ANG_1777) rsmD 1739131..1739679 (-) 549 WP_025271932.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ANG_RS08740 (ANG_1778) hpf 1739867..1740409 (-) 543 WP_003032381.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ANG_RS08745 (ANG_1779) comFC/cflB 1740487..1741152 (-) 666 WP_025271933.1 ComF family protein Machinery gene
  ANG_RS08750 (ANG_1780) comFA/cflA 1741149..1742450 (-) 1302 WP_025271934.1 DEAD/DEAH box helicase Machinery gene
  ANG_RS08755 (ANG_1781) - 1742507..1743142 (+) 636 WP_003032900.1 YigZ family protein -
  ANG_RS08760 (ANG_1782) cysK 1743241..1744170 (+) 930 WP_003035221.1 cysteine synthase A -
  ANG_RS08765 - 1744235..1744848 (+) 614 Protein_1733 transposase -
  ANG_RS11025 - 1744953..1745222 (+) 270 Protein_1734 IS30 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25597.77 Da        Isoelectric Point: 8.2065

>NTDB_id=65538 ANG_RS08745 WP_025271933.1 1740487..1741152(-) (comFC/cflB) [Streptococcus anginosus subsp. whileyi MAS624]
MNSCVLCENTLDEKLTFCDLLTLKKPKARACDDCFEKFQRISAQHCPKCYREGTCEVCMDCQVWIKKGKEVFHKSCFMYN
EAMKDFFSQYKFQGDYALYSVFTEVLQKELKRYSDYTLVPIPISAKKYQTRGFNQVTALLEGAKLPFKEVLEKHDTIAQS
SKTREERLQSRQCFKLKDNVQLPPKILLIDDIYTTGSTLQLAKEILVEAGVKEIVTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=65538 ANG_RS08745 WP_025271933.1 1740487..1741152(-) (comFC/cflB) [Streptococcus anginosus subsp. whileyi MAS624]
ATGAATTCATGTGTTTTATGTGAAAATACACTTGATGAAAAACTAACATTCTGTGATTTATTGACCTTGAAGAAGCCAAA
AGCAAGGGCTTGTGATGACTGTTTTGAAAAATTTCAGCGCATTTCAGCGCAGCATTGCCCGAAGTGCTATCGTGAAGGGA
CGTGCGAAGTCTGCATGGATTGCCAAGTATGGATAAAAAAAGGAAAAGAAGTTTTCCATAAAAGCTGCTTTATGTATAAC
GAAGCTATGAAAGACTTCTTTAGTCAATACAAATTTCAAGGAGATTATGCCCTTTATTCTGTATTTACAGAAGTTTTGCA
AAAGGAATTAAAAAGATACAGCGATTATACGCTTGTTCCCATTCCTATAAGTGCCAAAAAGTATCAGACAAGAGGGTTTA
ATCAAGTGACAGCTCTTCTTGAGGGCGCAAAGTTGCCATTTAAGGAAGTTTTAGAAAAGCATGATACAATTGCTCAATCC
AGTAAAACAAGAGAGGAGCGATTGCAAAGCCGGCAGTGTTTTAAATTGAAAGACAACGTTCAACTTCCACCCAAAATCCT
TTTGATAGATGACATTTATACAACAGGCTCAACCCTACAATTAGCCAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTGTGACATTTTCATTAGCCAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae D39

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae R6

48.165

98.643

0.475

Multiple sequence alignment