Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ88_RS09505 Genome accession   NZ_CP091509
Coordinates   2030616..2030915 (-) Length   99 a.a.
NCBI ID   WP_085419017.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2027002..2030415 2030616..2030915 flank 201


Gene organization within MGE regions


Location: 2027002..2030915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS09485 (LVJ88_09485) - 2027002..2027979 (+) 978 WP_244694145.1 IS30 family transposase -
  LVJ88_RS09490 (LVJ88_09490) - 2028050..2028739 (-) 690 WP_085419048.1 IS3 family transposase -
  LVJ88_RS09495 (LVJ88_09495) - 2028846..2029199 (-) 354 WP_085419041.1 helix-turn-helix domain-containing protein -
  LVJ88_RS09500 (LVJ88_09500) - 2029407..2030415 (-) 1009 Protein_1856 IS5 family transposase -
  LVJ88_RS09505 (LVJ88_09505) comE 2030616..2030915 (-) 300 WP_085419017.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10322.02 Da        Isoelectric Point: 10.5259

>NTDB_id=651833 LVJ88_RS09505 WP_085419017.1 2030616..2030915(-) (comE) [Neisseria dumasiana strain LMG 30012]
MKRFYAGVSAMLLSALSLAAVNINTATEEELKALPGIGPSKAAAIVAYRQHNGQFKSVDDLKNVKGIGEGVLAKLRDEAT
VNGGAKKKTDKAVPAIKGK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=651833 LVJ88_RS09505 WP_085419017.1 2030616..2030915(-) (comE) [Neisseria dumasiana strain LMG 30012]
ATGAAACGATTTTACGCAGGGGTATCGGCTATGTTGTTGTCGGCGCTGTCGCTGGCGGCGGTGAATATCAATACGGCAAC
GGAGGAGGAGTTGAAGGCTTTGCCGGGTATCGGCCCGTCGAAGGCGGCGGCGATTGTGGCCTACCGTCAGCATAATGGCC
AGTTCAAGAGTGTGGACGATTTGAAGAACGTGAAGGGTATCGGCGAGGGTGTTTTAGCGAAGCTGCGCGATGAGGCGACG
GTGAACGGTGGAGCCAAGAAGAAAACCGACAAAGCCGTTCCGGCAATTAAGGGTAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.143

98.99

0.566
  comE Neisseria gonorrhoeae MS11

57.143

98.99

0.566
  comE Neisseria gonorrhoeae MS11

57.143

98.99

0.566
  comE Neisseria gonorrhoeae MS11

57.143

98.99

0.566
  comEA Vibrio parahaemolyticus RIMD 2210633

41.573

89.899

0.374
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.174

69.697

0.364
  comEA Vibrio cholerae C6706

60

60.606

0.364
  comEA Vibrio cholerae strain A1552

60

60.606

0.364