Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | LVJ88_RS00035 | Genome accession | NZ_CP091509 |
| Coordinates | 6530..6829 (+) | Length | 99 a.a. |
| NCBI ID | WP_085419017.1 | Uniprot ID | - |
| Organism | Neisseria dumasiana strain LMG 30012 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 7130..8026 | 6530..6829 | flank | 301 |
Gene organization within MGE regions
Location: 6530..8026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVJ88_RS00035 (LVJ88_00035) | comE | 6530..6829 (+) | 300 | WP_085419017.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| LVJ88_RS00040 (LVJ88_00040) | - | 7030..8026 (+) | 997 | Protein_2 | IS5 family transposase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10322.02 Da Isoelectric Point: 10.5259
>NTDB_id=651806 LVJ88_RS00035 WP_085419017.1 6530..6829(+) (comE) [Neisseria dumasiana strain LMG 30012]
MKRFYAGVSAMLLSALSLAAVNINTATEEELKALPGIGPSKAAAIVAYRQHNGQFKSVDDLKNVKGIGEGVLAKLRDEAT
VNGGAKKKTDKAVPAIKGK
MKRFYAGVSAMLLSALSLAAVNINTATEEELKALPGIGPSKAAAIVAYRQHNGQFKSVDDLKNVKGIGEGVLAKLRDEAT
VNGGAKKKTDKAVPAIKGK
Nucleotide
Download Length: 300 bp
>NTDB_id=651806 LVJ88_RS00035 WP_085419017.1 6530..6829(+) (comE) [Neisseria dumasiana strain LMG 30012]
ATGAAACGATTTTACGCAGGGGTATCGGCTATGTTGTTGTCGGCGCTGTCGCTGGCGGCGGTGAATATCAATACGGCAAC
GGAGGAGGAGTTGAAGGCTTTGCCGGGTATCGGCCCGTCGAAGGCGGCGGCGATTGTGGCCTACCGTCAGCATAATGGCC
AGTTCAAGAGTGTGGACGATTTGAAGAACGTGAAGGGTATCGGCGAGGGTGTTTTAGCGAAGCTGCGCGATGAGGCGACG
GTGAACGGTGGAGCCAAGAAGAAAACCGACAAAGCCGTTCCGGCAATTAAGGGTAAATAA
ATGAAACGATTTTACGCAGGGGTATCGGCTATGTTGTTGTCGGCGCTGTCGCTGGCGGCGGTGAATATCAATACGGCAAC
GGAGGAGGAGTTGAAGGCTTTGCCGGGTATCGGCCCGTCGAAGGCGGCGGCGATTGTGGCCTACCGTCAGCATAATGGCC
AGTTCAAGAGTGTGGACGATTTGAAGAACGTGAAGGGTATCGGCGAGGGTGTTTTAGCGAAGCTGCGCGATGAGGCGACG
GTGAACGGTGGAGCCAAGAAGAAAACCGACAAAGCCGTTCCGGCAATTAAGGGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
57.143 |
98.99 |
0.566 |
| comE | Neisseria gonorrhoeae MS11 |
57.143 |
98.99 |
0.566 |
| comE | Neisseria gonorrhoeae MS11 |
57.143 |
98.99 |
0.566 |
| comE | Neisseria gonorrhoeae MS11 |
57.143 |
98.99 |
0.566 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
41.573 |
89.899 |
0.374 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
52.174 |
69.697 |
0.364 |
| comEA | Vibrio cholerae C6706 |
60 |
60.606 |
0.364 |
| comEA | Vibrio cholerae strain A1552 |
60 |
60.606 |
0.364 |