Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ83_RS04460 Genome accession   NZ_CP091508
Coordinates   990299..991795 (+) Length   498 a.a.
NCBI ID   WP_244786715.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 985299..996795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS04430 (LVJ83_04430) recO 986417..987163 (+) 747 WP_244786702.1 DNA repair protein RecO -
  LVJ83_RS04435 (LVJ83_04435) pdxJ 987340..988071 (+) 732 WP_244786704.1 pyridoxine 5'-phosphate synthase -
  LVJ83_RS04440 (LVJ83_04440) acpS 988150..988527 (+) 378 WP_244786706.1 holo-ACP synthase -
  LVJ83_RS04445 (LVJ83_04445) - 988562..989365 (+) 804 WP_244786708.1 NUDIX domain-containing protein -
  LVJ83_RS04450 (LVJ83_04450) - 989386..989817 (+) 432 WP_244786710.1 hypothetical protein -
  LVJ83_RS04455 (LVJ83_04455) - 989990..990280 (+) 291 WP_244786713.1 accessory factor UbiK family protein -
  LVJ83_RS04460 (LVJ83_04460) comM 990299..991795 (+) 1497 WP_244786715.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ83_RS04465 (LVJ83_04465) - 992081..992827 (+) 747 WP_244786717.1 SPOR domain-containing protein -
  LVJ83_RS04470 (LVJ83_04470) - 992848..993276 (+) 429 WP_244786719.1 VOC family protein -
  LVJ83_RS04475 (LVJ83_04475) dsbA1 993336..994037 (+) 702 WP_244786722.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LVJ83_RS04480 (LVJ83_04480) - 994326..995150 (+) 825 WP_244787648.1 undecaprenyl-diphosphate phosphatase -
  LVJ83_RS04485 (LVJ83_04485) - 995497..996501 (+) 1005 WP_244786724.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53197.05 Da        Isoelectric Point: 6.5054

>NTDB_id=651782 LVJ83_RS04460 WP_244786715.1 990299..991795(+) (comM) [Uruburuella testudinis strain CCUG 63373m]
MSLAVIYSRALSGMQAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGVLAASGQIAPDQLALYEFAGELALSGALRPVRGSLAMAWQGMQAGRAFVLPADNAEQAAVMQGIAVFGAESL
GQVAAHLNGIEPLAQTQADIDDRPSENGTLPDLQDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPGILPPL
TEDELISVWALRSLLPQYQQDLSRSRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPAKPCRCTPESIARYRSKISGPLLDRIDLTIEVPALSAAELIQQ
QAGECSADVLARVQTAREAQYTRQGKVNAALSVTELDDVAMVSKEAKQALGELLEKLSLSARSFHRIMRVARTLADLAGD
EAVGRTHVLRAVSFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=651782 LVJ83_RS04460 WP_244786715.1 990299..991795(+) (comM) [Uruburuella testudinis strain CCUG 63373m]
ATGTCTTTAGCCGTTATCTACAGCCGCGCCCTAAGCGGCATGCAGGCGCCGTTGGTGGAAGTGGAAGCCCACTTGGCCAA
CGGCCTGCCTGCGTTCAATATTGTCGGGCTGCCCGATACCGAAGTGAAGGAAAGCCGCGACCGAGTGCGGGCGGCGATTA
TTCAGAGCGGCTTTGATTTTCCGGCCAAAAAAATCACGGTTAACCTTGCTCCTGCCGATTTGCCGAAAGAATCGGGGCGC
TTCGATTTGCCGATTGCACTGGGTGTGTTGGCGGCTTCCGGCCAGATTGCGCCCGACCAACTGGCTTTATATGAGTTTGC
CGGCGAGTTGGCCTTGTCGGGCGCATTGCGCCCCGTGCGCGGTTCGTTGGCGATGGCCTGGCAGGGCATGCAGGCGGGCA
GGGCGTTTGTGCTGCCTGCCGATAATGCCGAACAGGCAGCGGTGATGCAGGGGATTGCTGTGTTTGGCGCCGAAAGCCTG
GGGCAGGTCGCGGCGCATCTCAACGGCATAGAGCCGTTGGCGCAAACACAGGCGGATATTGATGACAGGCCGTCTGAAAA
CGGAACATTGCCCGATTTGCAAGATGTTAAAGGGCAGCACACCGCCCGGCTGGCGCTGGAAATCGCCGCTGCCGGCGGCC
ACAGCCTCTTAATGATGGGGCCGCCGGGCACAGGGAAATCGATGCTGGCGCAACGGCTGCCTGGTATTTTACCGCCGCTG
ACGGAAGACGAATTGATTTCCGTGTGGGCGCTGCGCTCGCTGCTGCCGCAATACCAACAGGATTTGAGCCGCAGCCGCCC
GTTCCGCTCGCCGCATCACAGCGCCAGCTCGGCGGCAATGGTGGGCGGCGGTTCTGATCCGCGCCCGGGTGAAATTTCGT
TGGCACATCACGGCGTATTGTTTTTAGACGAATTGCCCGAATTCGACCGCAAAGTGCTGGAAGTGCTGCGCGAACCGCTC
GAAAACGGCGAAATCCATATTTCCCGCGCCGCCCGTCAGGCCGTGTATCCGGCCAAGTTTCAATTGGTGGCGGCAATGAA
CCCCTGCCCGTGCGGCTATCTCGGTCATCCCGCCAAGCCTTGCCGCTGCACCCCCGAAAGCATTGCCCGTTACCGCAGTA
AAATTTCCGGCCCCTTGCTCGACCGTATCGATCTGACCATTGAAGTGCCGGCCTTGTCGGCAGCAGAGCTGATACAGCAG
CAGGCGGGCGAATGCAGTGCTGATGTGCTGGCACGGGTGCAGACGGCGCGAGAGGCTCAATATACACGCCAGGGCAAAGT
CAATGCGGCCTTGAGTGTGACGGAACTGGATGATGTTGCCATGGTCAGTAAGGAGGCCAAACAGGCGCTGGGCGAGTTGC
TGGAAAAGCTGTCGCTTTCTGCACGCAGTTTTCACCGCATTATGCGGGTGGCGCGCACTTTGGCCGATTTGGCCGGAGAT
GAAGCGGTCGGGCGCACGCATGTGTTACGCGCGGTAAGTTTCCGTCGCGCTTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.307

100

0.534
  comM Vibrio campbellii strain DS40M4

52.314

99.799

0.522
  comM Haemophilus influenzae Rd KW20

49.105

100

0.496
  comM Glaesserella parasuis strain SC1401

48.713

100

0.494
  comM Legionella pneumophila str. Paris

48.111

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.111

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.744

100

0.432