Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   LVJ83_RS04475 Genome accession   NZ_CP091508
Coordinates   993336..994037 (+) Length   233 a.a.
NCBI ID   WP_244786722.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 988336..999037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS04445 (LVJ83_04445) - 988562..989365 (+) 804 WP_244786708.1 NUDIX domain-containing protein -
  LVJ83_RS04450 (LVJ83_04450) - 989386..989817 (+) 432 WP_244786710.1 hypothetical protein -
  LVJ83_RS04455 (LVJ83_04455) - 989990..990280 (+) 291 WP_244786713.1 accessory factor UbiK family protein -
  LVJ83_RS04460 (LVJ83_04460) comM 990299..991795 (+) 1497 WP_244786715.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ83_RS04465 (LVJ83_04465) - 992081..992827 (+) 747 WP_244786717.1 SPOR domain-containing protein -
  LVJ83_RS04470 (LVJ83_04470) - 992848..993276 (+) 429 WP_244786719.1 VOC family protein -
  LVJ83_RS04475 (LVJ83_04475) dsbA1 993336..994037 (+) 702 WP_244786722.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LVJ83_RS04480 (LVJ83_04480) - 994326..995150 (+) 825 WP_244787648.1 undecaprenyl-diphosphate phosphatase -
  LVJ83_RS04485 (LVJ83_04485) - 995497..996501 (+) 1005 WP_244786724.1 ABC transporter substrate-binding protein -
  LVJ83_RS04490 (LVJ83_04490) - 996741..997643 (+) 903 WP_244786725.1 ABC transporter permease -
  LVJ83_RS04495 (LVJ83_04495) - 997640..998434 (+) 795 WP_244786727.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25416.22 Da        Isoelectric Point: 9.6577

>NTDB_id=651783 LVJ83_RS04475 WP_244786722.1 993336..994037(+) (dsbA1) [Uruburuella testudinis strain CCUG 63373m]
MKLKPLLLAAAVTFGLAAQAYAAPVEGQDYTVLAKPIPQTQADKIEVLEFFGYFCVHCYHLDPVLLKHARSFPADTYLRT
EHVVWQPDMLGLARVAAAVNQSGLKYQANPAVFEAVYAQKINLADSATFKQWAESQKSFDGKKLIAAYDSFSNQAQAKKM
EELTNTYQISGTPTVIVGGKYQVKFTGDWQAGMKTIDELVAKVRSERGMKAPAAKAASALKSKGASFAKTANQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=651783 LVJ83_RS04475 WP_244786722.1 993336..994037(+) (dsbA1) [Uruburuella testudinis strain CCUG 63373m]
ATGAAATTGAAACCTCTGCTGTTGGCCGCTGCCGTTACTTTCGGCTTGGCCGCTCAAGCTTACGCCGCGCCGGTCGAGGG
GCAGGATTACACCGTATTGGCCAAACCTATTCCGCAAACACAGGCAGACAAAATCGAAGTGTTGGAATTTTTCGGTTATT
TTTGCGTGCATTGCTACCATCTCGACCCGGTATTGCTGAAGCATGCCCGCAGCTTCCCGGCCGACACTTATTTGCGCACC
GAACATGTGGTGTGGCAGCCGGACATGCTGGGTTTGGCTCGTGTGGCGGCAGCGGTTAACCAGTCGGGTTTGAAATACCA
GGCAAATCCGGCGGTGTTTGAAGCGGTTTATGCCCAAAAAATCAATTTGGCCGATTCGGCAACATTCAAACAGTGGGCTG
AAAGTCAAAAAAGCTTTGACGGTAAAAAGCTGATTGCCGCTTATGATTCGTTCAGCAATCAGGCTCAAGCCAAAAAAATG
GAAGAACTGACCAACACCTATCAAATCAGCGGCACGCCCACTGTGATTGTGGGCGGCAAATATCAGGTGAAATTCACCGG
CGACTGGCAGGCCGGCATGAAAACCATTGATGAGCTGGTGGCAAAAGTGCGCAGCGAACGCGGCATGAAAGCGCCGGCAG
CCAAGGCGGCTTCTGCTTTGAAAAGCAAAGGCGCTTCGTTTGCCAAAACCGCCAACCAATAA

Domains

Predicted by InterproScan.

DSBA-like thioredoxin domain (DSBA)

(85-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

62.162

79.399

0.494
  dsbA2 Neisseria meningitidis MC58

62.088

78.112

0.485