Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ78_RS09710 Genome accession   NZ_CP091507
Coordinates   2141346..2142839 (-) Length   497 a.a.
NCBI ID   WP_132953932.1    Uniprot ID   A0AAE9KI73
Organism   Uruburuella suis strain 1258/02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2136346..2147839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS09685 (LVJ78_09685) - 2136936..2138276 (+) 1341 WP_132953937.1 ATP-binding protein -
  LVJ78_RS09690 (LVJ78_09690) - 2138346..2139140 (-) 795 WP_132953936.1 Cof-type HAD-IIB family hydrolase -
  LVJ78_RS09695 (LVJ78_09695) dsbA1 2139257..2139955 (-) 699 WP_132953935.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LVJ78_RS09700 (LVJ78_09700) - 2140022..2140438 (-) 417 WP_132953934.1 VOC family protein -
  LVJ78_RS09705 (LVJ78_09705) - 2140478..2141227 (-) 750 WP_132953933.1 SPOR domain-containing protein -
  LVJ78_RS09710 (LVJ78_09710) comM 2141346..2142839 (-) 1494 WP_132953932.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ78_RS09715 (LVJ78_09715) - 2142855..2143157 (-) 303 WP_341539394.1 accessory factor UbiK family protein -
  LVJ78_RS09720 (LVJ78_09720) - 2143234..2143674 (-) 441 WP_132953931.1 hypothetical protein -
  LVJ78_RS09725 (LVJ78_09725) - 2143687..2144490 (-) 804 WP_132953930.1 NUDIX domain-containing protein -
  LVJ78_RS09730 (LVJ78_09730) acpS 2144512..2144892 (-) 381 WP_132953929.1 holo-ACP synthase -
  LVJ78_RS09735 (LVJ78_09735) pdxJ 2144946..2145677 (-) 732 WP_132953928.1 pyridoxine 5'-phosphate synthase -
  LVJ78_RS09740 (LVJ78_09740) recO 2145713..2146459 (-) 747 WP_132953927.1 DNA repair protein RecO -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52992.05 Da        Isoelectric Point: 7.3634

>NTDB_id=651758 LVJ78_RS09710 WP_132953932.1 2141346..2142839(-) (comM) [Uruburuella suis strain 1258/02]
MSLAVIYSRALSGMQAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAILQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGVLAASGQIAPDKLAAYEFAGELALSGALRPVRGALAMAWQGMQAGRAFVLPADNAKQAALMQGIAVFGAESL
GQVAAHLNGIEPLAQALPDIQERPSEHKLPDLQDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLAGILPPLD
EEELISVWALRSLLPQHRQELQRSRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLE
NGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPDAVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQE
AGESSADVLARVEAARARQYARQGKVNAALSVTELDGVAAVSKEAGQALGELLEKLSLSARSFHRIMRVARTLADLAGDE
VVGRSHVLRAVSFRRAL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=651758 LVJ78_RS09710 WP_132953932.1 2141346..2142839(-) (comM) [Uruburuella suis strain 1258/02]
ATGTCTTTAGCCGTGATCTACAGCCGCGCTTTAAGCGGCATGCAAGCGCCGTTGGTTGAAGTGGAAGCCCACTTGGCCAA
CGGCTTGCCTGCGTTCAACATCGTCGGCCTGCCCGACACCGAAGTGAAAGAAAGCCGCGACCGCGTGCGCGCGGCGATTT
TGCAGAGCGGCTTCGATTTTCCCGCCAAAAAAATCACCGTTAATCTTGCCCCCGCCGATTTGCCGAAAGAATCGGGGCGC
TTCGATTTGCCGATTGCCTTGGGCGTGTTGGCCGCTTCCGGCCAGATTGCGCCCGATAAATTGGCGGCCTACGAATTTGC
CGGCGAGCTGGCGCTATCCGGTGCATTGCGCCCGGTGCGCGGCGCCTTGGCTATGGCCTGGCAGGGCATGCAGGCGGGCA
GGGCATTTGTGCTGCCCGCCGATAATGCCAAACAGGCCGCGCTGATGCAGGGCATTGCCGTGTTTGGCGCGGAAAGCCTG
GGGCAGGTGGCGGCACATCTCAACGGCATCGAGCCTTTGGCACAAGCCTTGCCCGATATTCAAGAGCGGCCGTCTGAACA
CAAACTGCCCGATTTGCAAGATGTGAAAGGCCAGCACACCGCGCGGCTGGCGCTGGAAATTGCCGCTGCCGGCGGCCACA
GTCTGCTGATGATGGGGCCGCCGGGCACGGGCAAATCGATGCTGGCGCAGCGCCTGGCCGGCATTTTGCCGCCTCTGGAT
GAAGAAGAATTGATTTCTGTGTGGGCATTGCGCTCGTTGCTGCCGCAGCACCGGCAAGAATTGCAGCGCAGCCGCCCGTT
TCGCTCGCCGCACCACAGCGCCAGCGCCGCAGCTATGGTGGGCGGGGGCTCCGACCCGCGCCCGGGCGAAATTTCATTGG
CGCATCATGGCGTACTGTTTCTCGATGAATTGCCCGAGTTCGACCGCAAAGTGTTGGAAGTGTTGCGCGAGCCGCTGGAA
AACGGCGAAATCCATATCTCCCGCGCCGCCCGCCAAGCTGTGTATCCGGCCAAATTCCAGCTGGTGGCCGCGATGAACCC
CTGCCCGTGCGGCTATCTGGGCCATCCGGTGAAGCCGTGTCGCTGCACACCCGATGCCGTGGCCCGCTACCGCAGCAAAA
TTTCTGGCCCTCTGCTTGACCGCATCGATTTAACCATCGAAGTGCCCAGCCTCTCCGCCGCCGAATTGATGCAGCAAGAA
GCGGGCGAATCCAGCGCCGATGTGCTGGCGCGGGTAGAAGCGGCGCGTGCGCGCCAATATGCGCGCCAAGGCAAAGTGAA
TGCTGCTTTGAGCGTAACGGAACTGGACGGCGTGGCCGCGGTCAGTAAAGAGGCCGGCCAGGCCTTGGGCGAATTGTTAG
AAAAGCTCTCGCTTTCGGCGCGCAGCTTCCACCGAATTATGCGGGTGGCGCGCACGCTGGCCGATTTGGCCGGCGATGAG
GTGGTGGGGCGCAGCCATGTGTTGCGCGCAGTAAGTTTTCGTAGAGCTTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.614

100

0.537
  comM Vibrio campbellii strain DS40M4

52.6

100

0.529
  comM Glaesserella parasuis strain SC1401

49.402

100

0.499
  comM Haemophilus influenzae Rd KW20

48.805

100

0.493
  comM Legionella pneumophila str. Paris

47.809

100

0.483
  comM Legionella pneumophila strain ERS1305867

47.809

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.772

100

0.435