Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   LVJ78_RS09695 Genome accession   NZ_CP091507
Coordinates   2139257..2139955 (-) Length   232 a.a.
NCBI ID   WP_132953935.1    Uniprot ID   A0AAE9KGJ6
Organism   Uruburuella suis strain 1258/02     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2134257..2144955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS09680 (LVJ78_09680) - 2136051..2136713 (+) 663 WP_132953938.1 response regulator -
  LVJ78_RS09685 (LVJ78_09685) - 2136936..2138276 (+) 1341 WP_132953937.1 ATP-binding protein -
  LVJ78_RS09690 (LVJ78_09690) - 2138346..2139140 (-) 795 WP_132953936.1 Cof-type HAD-IIB family hydrolase -
  LVJ78_RS09695 (LVJ78_09695) dsbA1 2139257..2139955 (-) 699 WP_132953935.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LVJ78_RS09700 (LVJ78_09700) - 2140022..2140438 (-) 417 WP_132953934.1 VOC family protein -
  LVJ78_RS09705 (LVJ78_09705) - 2140478..2141227 (-) 750 WP_132953933.1 SPOR domain-containing protein -
  LVJ78_RS09710 (LVJ78_09710) comM 2141346..2142839 (-) 1494 WP_132953932.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ78_RS09715 (LVJ78_09715) - 2142855..2143157 (-) 303 WP_341539394.1 accessory factor UbiK family protein -
  LVJ78_RS09720 (LVJ78_09720) - 2143234..2143674 (-) 441 WP_132953931.1 hypothetical protein -
  LVJ78_RS09725 (LVJ78_09725) - 2143687..2144490 (-) 804 WP_132953930.1 NUDIX domain-containing protein -
  LVJ78_RS09730 (LVJ78_09730) acpS 2144512..2144892 (-) 381 WP_132953929.1 holo-ACP synthase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25225.04 Da        Isoelectric Point: 9.6924

>NTDB_id=651757 LVJ78_RS09695 WP_132953935.1 2139257..2139955(-) (dsbA1) [Uruburuella suis strain 1258/02]
MKLKTVFLAAALALAANAHAALVEGQDYTVLPKPIPQAQADKIEVLEFFGYFCVHCYHLDPILLKHAQSFPADTYLRTEH
VVWQPEMLGLARVAAAVNQSGLKYQANSAVFQAVYEQKINLADTATFKQWAAQQKSFDGQKLIAAYDSFSNQAQAKKMEE
LTNTYQISGTPTVIVGGKYQVKFTGDWNAGMKTIDELAAKVRSERGMKAPAAKPAAAALKSKGAALAKTANK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=651757 LVJ78_RS09695 WP_132953935.1 2139257..2139955(-) (dsbA1) [Uruburuella suis strain 1258/02]
ATGAAACTGAAAACCGTATTTTTAGCCGCCGCTCTCGCGTTGGCTGCCAATGCCCACGCCGCTTTGGTGGAAGGGCAGGA
TTACACTGTGCTGCCCAAGCCGATTCCTCAAGCTCAGGCCGATAAAATCGAAGTGCTGGAGTTTTTCGGCTATTTCTGCG
TGCATTGCTACCATCTTGATCCGATTTTGCTCAAGCACGCCCAATCTTTCCCCGCCGACACTTATCTGCGCACCGAGCAT
GTGGTGTGGCAGCCGGAAATGCTGGGCTTGGCGCGCGTGGCCGCAGCCGTGAATCAATCGGGCTTGAAATATCAGGCTAA
TTCGGCGGTGTTCCAAGCCGTGTATGAGCAGAAAATCAATTTGGCCGATACAGCCACTTTCAAGCAATGGGCGGCGCAGC
AAAAAAGCTTTGACGGCCAAAAACTGATTGCCGCTTATGATTCGTTCAGCAACCAGGCGCAAGCCAAGAAAATGGAAGAG
CTGACCAACACCTATCAAATCAGCGGCACGCCCACGGTGATTGTGGGCGGCAAATATCAGGTGAAATTCACCGGCGATTG
GAATGCCGGCATGAAAACCATCGATGAATTGGCTGCCAAAGTGCGCAGCGAGCGCGGCATGAAAGCGCCGGCTGCCAAAC
CCGCAGCCGCCGCACTGAAAAGCAAAGGTGCTGCGCTGGCCAAAACGGCCAATAAATAA

Domains

Predicted by InterproScan.

DSBA-like thioredoxin domain (DSBA)

(74-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

62.032

80.603

0.5
  dsbA2 Neisseria meningitidis MC58

61.413

79.31

0.487