Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ78_RS07700 Genome accession   NZ_CP091507
Coordinates   1707967..1708221 (+) Length   84 a.a.
NCBI ID   WP_132954335.1    Uniprot ID   A0AAE9KJ87
Organism   Uruburuella suis strain 1258/02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702967..1713221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS07680 (LVJ78_07680) - 1703190..1703897 (+) 708 WP_132954332.1 GntR family transcriptional regulator -
  LVJ78_RS07685 (LVJ78_07685) - 1703907..1704878 (+) 972 WP_132954331.1 TIM barrel protein -
  LVJ78_RS07690 (LVJ78_07690) - 1705092..1706276 (+) 1185 WP_279387856.1 MFS transporter -
  LVJ78_RS07695 (LVJ78_07695) - 1706551..1707576 (+) 1026 WP_132954329.1 transferrin-binding protein-like solute binding protein -
  LVJ78_RS07700 (LVJ78_07700) comE 1707967..1708221 (+) 255 WP_132954335.1 helix-hairpin-helix domain-containing protein Machinery gene
  LVJ78_RS07705 (LVJ78_07705) - 1708337..1709053 (-) 717 WP_243650367.1 methyltransferase domain-containing protein -
  LVJ78_RS07710 (LVJ78_07710) - 1709232..1711382 (+) 2151 WP_132954328.1 LysM peptidoglycan-binding domain-containing protein -
  LVJ78_RS07715 (LVJ78_07715) ribBA 1711602..1712957 (+) 1356 WP_132954327.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 84 a.a.        Molecular weight: 8795.27 Da        Isoelectric Point: 9.0790

>NTDB_id=651750 LVJ78_RS07700 WP_132954335.1 1707967..1708221(+) (comE) [Uruburuella suis strain 1258/02]
MKKTILASLALLGMSCALAAVNINTAGADELKALPGIGSAKAEAIVEYRKQHGNFKSVEELKNVKGIGESLFNRLQDGTI
VPAV

Nucleotide


Download         Length: 255 bp        

>NTDB_id=651750 LVJ78_RS07700 WP_132954335.1 1707967..1708221(+) (comE) [Uruburuella suis strain 1258/02]
ATGAAAAAAACCATACTGGCCTCTTTGGCTCTTTTGGGCATGAGTTGCGCATTGGCAGCGGTTAACATCAACACCGCCGG
TGCCGATGAACTCAAAGCTCTACCGGGCATCGGCTCGGCAAAGGCAGAGGCAATTGTTGAATATCGCAAACAACACGGCA
ATTTCAAAAGCGTGGAAGAGTTGAAAAATGTAAAAGGCATTGGCGAGAGCTTGTTCAACCGTTTGCAAGACGGCACGATT
GTGCCCGCTGTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

54.545

91.667

0.5
  comE Neisseria gonorrhoeae MS11

54.545

91.667

0.5
  comE Neisseria gonorrhoeae MS11

54.545

91.667

0.5
  comE Neisseria gonorrhoeae MS11

54.545

91.667

0.5
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.78

97.619

0.476
  comE1/comEA Haemophilus influenzae Rd KW20

52.459

72.619

0.381
  comEA Acinetobacter baylyi ADP1

54.386

67.857

0.369
  comEA Vibrio parahaemolyticus RIMD 2210633

53.448

69.048

0.369