Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | L1871_RS02795 | Genome accession | NZ_CP091176 |
| Coordinates | 561810..562919 (-) | Length | 369 a.a. |
| NCBI ID | WP_042882153.1 | Uniprot ID | A0A2L0TPJ0 |
| Organism | Aeromonas caviae strain SCLZS52 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 531372..586303 | 561810..562919 | within | 0 |
Gene organization within MGE regions
Location: 531372..586303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1871_RS02635 (L1871_02635) | rlmD | 532134..533486 (+) | 1353 | WP_045523151.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| L1871_RS02640 (L1871_02640) | - | 533675..534184 (+) | 510 | WP_174217465.1 | GNAT family N-acetyltransferase | - |
| L1871_RS02645 (L1871_02645) | - | 534266..534436 (+) | 171 | WP_164882078.1 | DUF5363 family protein | - |
| L1871_RS02650 (L1871_02650) | tppF | 534405..535019 (-) | 615 | WP_029313748.1 | type IVa pilus pseudopilin TppF | - |
| L1871_RS02655 (L1871_02655) | - | 535060..535848 (+) | 789 | WP_236276005.1 | TatD family hydrolase | - |
| L1871_RS02660 (L1871_02660) | - | 536062..537336 (+) | 1275 | WP_010673026.1 | NupC/NupG family nucleoside CNT transporter | - |
| L1871_RS02665 (L1871_02665) | - | 537460..537630 (+) | 171 | WP_010673027.1 | XapX domain-containing protein | - |
| L1871_RS02670 (L1871_02670) | deoC | 538018..538791 (+) | 774 | WP_039039946.1 | deoxyribose-phosphate aldolase | - |
| L1871_RS02675 (L1871_02675) | deoA | 538874..540205 (+) | 1332 | WP_043153005.1 | thymidine phosphorylase | - |
| L1871_RS02680 (L1871_02680) | - | 540220..541428 (+) | 1209 | WP_236276007.1 | phosphopentomutase | - |
| L1871_RS02685 (L1871_02685) | deoD | 541562..542278 (+) | 717 | WP_005341325.1 | purine-nucleoside phosphorylase | - |
| L1871_RS23705 | - | 542343..544585 (-) | 2243 | Protein_510 | PAS domain S-box protein | - |
| L1871_RS02700 (L1871_02700) | - | 544655..545263 (-) | 609 | WP_010673032.1 | AhpA/YtjB family protein | - |
| L1871_RS02705 (L1871_02705) | serB | 545457..546461 (+) | 1005 | WP_041210929.1 | phosphoserine phosphatase SerB | - |
| L1871_RS02710 (L1871_02710) | - | 546490..547395 (+) | 906 | WP_139737107.1 | alpha/beta fold hydrolase | - |
| L1871_RS02715 (L1871_02715) | - | 547452..549827 (-) | 2376 | WP_045523168.1 | PilZ domain-containing protein | - |
| L1871_RS02720 (L1871_02720) | radA | 549928..551292 (+) | 1365 | WP_010673036.1 | DNA repair protein RadA | - |
| L1871_RS02725 (L1871_02725) | - | 551346..551732 (-) | 387 | WP_029313755.1 | PilZ domain-containing protein | - |
| L1871_RS02730 (L1871_02730) | - | 551835..552317 (-) | 483 | WP_029313757.1 | Rsd/AlgQ family anti-sigma factor | - |
| L1871_RS02735 (L1871_02735) | hupA | 552656..552928 (+) | 273 | WP_005305063.1 | nucleoid-associated protein HU-alpha | - |
| L1871_RS02740 (L1871_02740) | - | 553075..554162 (+) | 1088 | WP_157161627.1 | IS3 family transposase | - |
| L1871_RS02745 (L1871_02745) | - | 554244..554669 (+) | 426 | WP_029313758.1 | hypothetical protein | - |
| L1871_RS02750 (L1871_02750) | - | 554753..554902 (-) | 150 | WP_080944170.1 | hypothetical protein | - |
| L1871_RS02755 (L1871_02755) | dusA | 554905..555891 (-) | 987 | WP_236276023.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| L1871_RS02760 (L1871_02760) | zur | 556028..556486 (+) | 459 | WP_010673042.1 | zinc uptake transcriptional repressor Zur | - |
| L1871_RS02765 (L1871_02765) | - | 556476..556937 (+) | 462 | WP_010673043.1 | chemotaxis protein CheX | - |
| L1871_RS02770 (L1871_02770) | - | 556943..557170 (+) | 228 | WP_039039956.1 | hypothetical protein | - |
| L1871_RS02775 (L1871_02775) | brnQ | 557260..558567 (-) | 1308 | WP_268885513.1 | branched-chain amino acid transport system II carrier protein | - |
| L1871_RS02780 (L1871_02780) | - | 558758..559468 (-) | 711 | WP_201926729.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| L1871_RS02785 (L1871_02785) | srmB | 559596..560816 (+) | 1221 | WP_041210934.1 | ATP-dependent RNA helicase SrmB | - |
| L1871_RS02790 (L1871_02790) | yaaA | 561004..561777 (-) | 774 | WP_236276027.1 | peroxide stress protein YaaA | - |
| L1871_RS02795 (L1871_02795) | pilU | 561810..562919 (-) | 1110 | WP_042882153.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| L1871_RS02800 (L1871_02800) | pilT | 562943..563977 (-) | 1035 | WP_010673050.1 | type IVa pilus ATPase TapT | Machinery gene |
| L1871_RS02805 (L1871_02805) | - | 564017..564718 (+) | 702 | WP_042864460.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| L1871_RS02810 (L1871_02810) | proC | 564841..565665 (+) | 825 | WP_219604084.1 | pyrroline-5-carboxylate reductase | - |
| L1871_RS02815 (L1871_02815) | - | 565689..566240 (+) | 552 | WP_042014922.1 | YggT family protein | - |
| L1871_RS02820 (L1871_02820) | yggU | 566240..566539 (+) | 300 | WP_010673054.1 | DUF167 family protein YggU | - |
| L1871_RS02825 (L1871_02825) | - | 566558..566977 (+) | 420 | WP_236276029.1 | DUF4426 domain-containing protein | - |
| L1871_RS02830 (L1871_02830) | - | 567053..567883 (-) | 831 | WP_201935015.1 | CPBP family intramembrane glutamic endopeptidase | - |
| L1871_RS02835 (L1871_02835) | - | 568045..568335 (-) | 291 | WP_039039963.1 | hypothetical protein | - |
| L1871_RS02840 (L1871_02840) | - | 568385..568759 (-) | 375 | WP_039039964.1 | YacL family protein | - |
| L1871_RS02845 (L1871_02845) | - | 568966..570081 (+) | 1116 | WP_039039965.1 | sugar diacid recognition domain-containing protein | - |
| L1871_RS02850 (L1871_02850) | - | 570201..571463 (+) | 1263 | WP_236276030.1 | GntP family permease | - |
| L1871_RS02855 (L1871_02855) | - | 571473..572606 (+) | 1134 | WP_236276031.1 | glycerate kinase | - |
| L1871_RS02860 (L1871_02860) | - | 572868..573431 (+) | 564 | WP_201985213.1 | NnrU family protein | - |
| L1871_RS02865 (L1871_02865) | - | 573491..574027 (+) | 537 | WP_041210945.1 | glutathione peroxidase | - |
| L1871_RS02870 (L1871_02870) | - | 574110..575045 (+) | 936 | WP_039039969.1 | LysR family transcriptional regulator | - |
| L1871_RS02875 (L1871_02875) | - | 575228..576424 (+) | 1197 | WP_236276033.1 | NupC/NupG family nucleoside CNT transporter | - |
| L1871_RS02880 (L1871_02880) | - | 577026..577520 (-) | 495 | WP_128271582.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| L1871_RS02885 (L1871_02885) | arfB | 577547..577963 (-) | 417 | WP_010673067.1 | alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB | - |
| L1871_RS02890 (L1871_02890) | glnK | 578165..578503 (+) | 339 | WP_005332325.1 | P-II family nitrogen regulator | - |
| L1871_RS02895 (L1871_02895) | - | 578732..579739 (+) | 1008 | WP_039039971.1 | Fe(3+) ABC transporter substrate-binding protein | - |
| L1871_RS02900 (L1871_02900) | - | 579779..581404 (+) | 1626 | WP_042014910.1 | ABC transporter permease | - |
| L1871_RS02905 (L1871_02905) | - | 581445..582479 (+) | 1035 | WP_041214470.1 | ABC transporter ATP-binding protein | - |
| L1871_RS02910 (L1871_02910) | - | 582569..583474 (+) | 906 | WP_042864452.1 | Dyp-type peroxidase | - |
| L1871_RS02915 (L1871_02915) | argR | 583554..584024 (-) | 471 | WP_005308670.1 | transcriptional regulator ArgR | - |
| L1871_RS02920 (L1871_02920) | - | 584225..584965 (+) | 741 | WP_010673072.1 | ATP-binding cassette domain-containing protein | - |
| L1871_RS02925 (L1871_02925) | - | 584990..585727 (+) | 738 | WP_010673073.1 | arginine ABC transporter substrate-binding protein | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 40901.04 Da Isoelectric Point: 6.3155
>NTDB_id=648179 L1871_RS02795 WP_042882153.1 561810..562919(-) (pilU) [Aeromonas caviae strain SCLZS52]
MNMDVLLAALVEQKGSDLFITVDAPPTLKVNGRLVSLGPAPLDKTTALALIRESLDETHFERFLHTREANYAIQRGSLGR
FRVSAFWQQDMPGMVLRRIETRIPTFDELVLPPILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGFRNQHGDGHILTVED
PVEFVHQHDRCLVTQREVGIDTASFDVALKNSLRQAPDVILIGEIRSQETMEFAIQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQFLFDLSFNLRAIVAQQLLPSAHGQRRVAAFEILLNTPLVTDIIRKGEMHRLKEVMTKSGELGMQTFDQA
LFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQLGAGTLDNVTLDE
MNMDVLLAALVEQKGSDLFITVDAPPTLKVNGRLVSLGPAPLDKTTALALIRESLDETHFERFLHTREANYAIQRGSLGR
FRVSAFWQQDMPGMVLRRIETRIPTFDELVLPPILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGFRNQHGDGHILTVED
PVEFVHQHDRCLVTQREVGIDTASFDVALKNSLRQAPDVILIGEIRSQETMEFAIQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQFLFDLSFNLRAIVAQQLLPSAHGQRRVAAFEILLNTPLVTDIIRKGEMHRLKEVMTKSGELGMQTFDQA
LFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQLGAGTLDNVTLDE
Nucleotide
Download Length: 1110 bp
>NTDB_id=648179 L1871_RS02795 WP_042882153.1 561810..562919(-) (pilU) [Aeromonas caviae strain SCLZS52]
ATGAACATGGATGTTCTGCTCGCCGCACTGGTTGAACAAAAGGGCTCGGATCTCTTCATCACGGTCGATGCCCCCCCGAC
CCTCAAGGTCAACGGGCGTCTGGTGTCGCTCGGACCAGCCCCCCTCGACAAGACGACGGCGCTGGCGCTGATCAGGGAGA
GCCTGGACGAGACCCACTTCGAGCGCTTCCTGCACACCCGCGAGGCCAACTACGCCATCCAGCGAGGCTCGCTGGGGCGC
TTTCGGGTCAGCGCCTTCTGGCAACAGGATATGCCGGGCATGGTGCTGCGCCGCATCGAGACCCGCATCCCCACCTTTGA
CGAGCTGGTGCTGCCTCCCATCCTGCAGGAGGTCGCCATGGCCAAACGCGGGCTGGTGCTTTTCGTCGGCGCCACTGGCG
CCGGCAAGTCCACCACCCAGGCGGCCATGATAGGCTTTCGCAACCAGCACGGTGACGGCCACATCCTGACGGTGGAGGAT
CCGGTGGAGTTCGTCCATCAGCACGATCGCTGTCTGGTGACCCAGCGGGAGGTGGGGATCGACACCGCATCCTTCGATGT
CGCCCTCAAAAACTCCCTGCGCCAGGCCCCGGATGTCATCCTCATCGGTGAAATCCGCTCCCAGGAGACCATGGAGTTCG
CCATCCAGTTCGCCGAGACGGGACACCTCTGCCTCGCCACCTTGCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTGCATCTGGTCCCCCAGGAGAAGCACCGCCAGTTCCTGTTCGATCTCTCCTTCAACCTGCGCGCCATCGTCGCCCAGCA
GCTGCTCCCCTCCGCTCATGGGCAGCGCCGGGTCGCCGCCTTCGAGATCCTGCTCAACACCCCGCTCGTCACCGACATCA
TCCGCAAGGGAGAGATGCACAGACTCAAGGAGGTGATGACCAAATCCGGCGAGCTTGGCATGCAGACCTTCGATCAGGCG
CTGTTCACCCTGTTCTGCGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCCGCCAACGACCTGCGACT
GCTCATCAAGCTGTCGGGTCGCGAGCAGCTGGGCGCAGGCACTCTCGACAACGTGACCCTGGATGAATGA
ATGAACATGGATGTTCTGCTCGCCGCACTGGTTGAACAAAAGGGCTCGGATCTCTTCATCACGGTCGATGCCCCCCCGAC
CCTCAAGGTCAACGGGCGTCTGGTGTCGCTCGGACCAGCCCCCCTCGACAAGACGACGGCGCTGGCGCTGATCAGGGAGA
GCCTGGACGAGACCCACTTCGAGCGCTTCCTGCACACCCGCGAGGCCAACTACGCCATCCAGCGAGGCTCGCTGGGGCGC
TTTCGGGTCAGCGCCTTCTGGCAACAGGATATGCCGGGCATGGTGCTGCGCCGCATCGAGACCCGCATCCCCACCTTTGA
CGAGCTGGTGCTGCCTCCCATCCTGCAGGAGGTCGCCATGGCCAAACGCGGGCTGGTGCTTTTCGTCGGCGCCACTGGCG
CCGGCAAGTCCACCACCCAGGCGGCCATGATAGGCTTTCGCAACCAGCACGGTGACGGCCACATCCTGACGGTGGAGGAT
CCGGTGGAGTTCGTCCATCAGCACGATCGCTGTCTGGTGACCCAGCGGGAGGTGGGGATCGACACCGCATCCTTCGATGT
CGCCCTCAAAAACTCCCTGCGCCAGGCCCCGGATGTCATCCTCATCGGTGAAATCCGCTCCCAGGAGACCATGGAGTTCG
CCATCCAGTTCGCCGAGACGGGACACCTCTGCCTCGCCACCTTGCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTGCATCTGGTCCCCCAGGAGAAGCACCGCCAGTTCCTGTTCGATCTCTCCTTCAACCTGCGCGCCATCGTCGCCCAGCA
GCTGCTCCCCTCCGCTCATGGGCAGCGCCGGGTCGCCGCCTTCGAGATCCTGCTCAACACCCCGCTCGTCACCGACATCA
TCCGCAAGGGAGAGATGCACAGACTCAAGGAGGTGATGACCAAATCCGGCGAGCTTGGCATGCAGACCTTCGATCAGGCG
CTGTTCACCCTGTTCTGCGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCCGCCAACGACCTGCGACT
GCTCATCAAGCTGTCGGGTCGCGAGCAGCTGGGCGCAGGCACTCTCGACAACGTGACCCTGGATGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Vibrio cholerae strain A1552 |
60.598 |
99.729 |
0.604 |
| pilU | Pseudomonas stutzeri DSM 10701 |
58.974 |
95.122 |
0.561 |
| pilU | Acinetobacter baylyi ADP1 |
57.79 |
95.664 |
0.553 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.857 |
91.057 |
0.39 |
| pilT | Legionella pneumophila strain Lp02 |
40.816 |
92.954 |
0.379 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.816 |
92.954 |
0.379 |