Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   L1O00_RS17730 Genome accession   NZ_CP091140
Coordinates   3927349..3927669 (+) Length   106 a.a.
NCBI ID   WP_278168720.1    Uniprot ID   -
Organism   Aeromonas veronii strain b1-3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3922349..3932669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O00_RS17715 (L1O00_17690) yfbV 3922827..3923267 (-) 441 WP_278168716.1 terminus macrodomain insulation protein YfbV -
  L1O00_RS17720 (L1O00_17695) - 3923572..3924774 (+) 1203 WP_005349210.1 acetate kinase -
  L1O00_RS17725 (L1O00_17700) pta 3924830..3927010 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  L1O00_RS17730 (L1O00_17705) comEA/comE1 3927349..3927669 (+) 321 WP_278168720.1 ComEA family DNA-binding protein Machinery gene
  L1O00_RS17735 (L1O00_17710) galU 3927765..3928676 (+) 912 WP_069555871.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L1O00_RS17740 (L1O00_17715) - 3928890..3930287 (+) 1398 WP_278168722.1 peptide MFS transporter -
  L1O00_RS17745 (L1O00_17720) - 3930361..3931332 (-) 972 WP_278168724.1 response regulator -
  L1O00_RS17750 (L1O00_17725) - 3931573..3932271 (+) 699 WP_278168726.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11366.20 Da        Isoelectric Point: 10.0127

>NTDB_id=647981 L1O00_RS17730 WP_278168720.1 3927349..3927669(+) (comEA/comE1) [Aeromonas veronii strain b1-3]
MRKNSLPIIMLLSALPLFTQPSQAADKVVPKQATTVATKQESGKVDINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=647981 L1O00_RS17730 WP_278168720.1 3927349..3927669(+) (comEA/comE1) [Aeromonas veronii strain b1-3]
ATGCGTAAAAACAGCCTGCCCATCATCATGTTGCTGTCAGCCCTCCCGTTGTTCACCCAACCCTCACAGGCCGCAGACAA
GGTCGTGCCCAAGCAGGCCACCACGGTTGCCACCAAGCAGGAGAGCGGCAAAGTGGATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.087

100

0.5
  comEA Vibrio cholerae C6706

47.573

97.17

0.462
  comEA Vibrio cholerae strain A1552

47.573

97.17

0.462
  comE1/comEA Haemophilus influenzae Rd KW20

57.143

79.245

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

44.444

93.396

0.415
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.235

96.226

0.368