Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SCAZ3_RS06595 Genome accession   NZ_AIDX01000001
Coordinates   1379195..1381174 (+) Length   659 a.a.
NCBI ID   WP_003046673.1    Uniprot ID   A0AAV3FRY9
Organism   Streptococcus canis FSL Z3-227     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374195..1386174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS06580 (SCAZ3_01985) sufB 1374414..1375832 (+) 1419 WP_003046659.1 Fe-S cluster assembly protein SufB -
  SCAZ3_RS06585 (SCAZ3_01995) - 1376269..1377450 (-) 1182 WP_003046666.1 D-alanyl-D-alanine carboxypeptidase family protein -
  SCAZ3_RS06590 (SCAZ3_02000) pbp3 1377626..1378864 (-) 1239 WP_003046669.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SCAZ3_RS06595 (SCAZ3_02005) amiA 1379195..1381174 (+) 1980 WP_003046673.1 peptide ABC transporter substrate-binding protein Regulator
  SCAZ3_RS06600 (SCAZ3_02010) amiC 1381240..1382742 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  SCAZ3_RS06605 (SCAZ3_02015) amiD 1382742..1383668 (+) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  SCAZ3_RS06610 (SCAZ3_02020) amiE 1383677..1384747 (+) 1071 WP_003046682.1 ABC transporter ATP-binding protein Regulator
  SCAZ3_RS06615 (SCAZ3_02025) amiF 1384740..1385663 (+) 924 WP_003046685.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72489.84 Da        Isoelectric Point: 4.9490

>NTDB_id=64786 SCAZ3_RS06595 WP_003046673.1 1379195..1381174(+) (amiA) [Streptococcus canis FSL Z3-227]
MKKSRWLATLGVAVLSVSVLAACGSKNASGGSDATKTYKYVFVNDPKSLDYILSNGGGTTDVATQMVDGLLENDKYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDGKSEALYVVEDSIKNLKAYKNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNEKFLKSQGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFTVARLYPNDPTYKSAKKNYADNITYGMLTSDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LDDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGIKAGESKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGAFAWAGAKGPASVYYYKGMKLQDKPVTAKQYEKAKEKWLK
AKAKSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=64786 SCAZ3_RS06595 WP_003046673.1 1379195..1381174(+) (amiA) [Streptococcus canis FSL Z3-227]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCCTGCGGTAGTAAAAA
TGCTTCAGGTGGTTCAGATGCGACAAAAACGTACAAATATGTTTTTGTTAATGATCCAAAATCATTGGACTATATTTTGT
CTAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTCGATGGTCTTTTGGAAAATGACAAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTACACCCTTCGTGATGGTGTCTCTTGGTA
CACTGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCAGTGGATGGCAAGT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAACCTAAAAGCTTATAAAAATGGTGAAGTCGATTTCAAAGAGGTT
GGTGTTAAAGCCCTTGACGACAAAACCGTTCAATACACCTTGAACAAACCTGAAAGTTATTGGAACTCCAAAACAACTTA
CAGTGTTCTTTTCCCAGTCAATGAAAAATTCTTGAAATCACAAGGTAAAGATTTTGGAACAACAGACCCATCGTCAATCC
TAGTTAACGGTGCTTACTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTTCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGCTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCACTGTTGCACGACTTTATCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGCATGTTGACTAGTGATATTCGTCATTTAACATGGAACTTGAACCGTACTTCCTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCCTTCGACCG
TGCGTCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACAATTGGGGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACTATGGGTGATGAGTGGAAAGACGTTAAC
TTAGACGATGCTCAAGATGGATTTTATAATCCAGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTCTTACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAATCTT
TCAAACAATCCGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTTGGAATTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTTTACTTGATGAAGCAGCAGCGATTACAGACGACAAC
GATGCGCGCTACAAGGCTTACGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCTCGAGTTACTAAAGCTGTTCCATTTAGCGGTGCCTTTGCCTGGGCAGGTGCTAAAGGTCCTGCTTCTGTAT
ATTATTACAAAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAA
GCAAAGGCTAAGTCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.131

100

0.514
  amiA3 Streptococcus thermophilus LMG 18311

50.528

100

0.508
  amiA3 Streptococcus thermophilus LMD-9

50.226

100

0.505

Multiple sequence alignment