Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SCAZ3_RS06600 Genome accession   NZ_AIDX01000001
Coordinates   1381240..1382742 (+) Length   500 a.a.
NCBI ID   WP_003046676.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1376240..1387742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS06585 (SCAZ3_01995) - 1376269..1377450 (-) 1182 WP_003046666.1 D-alanyl-D-alanine carboxypeptidase family protein -
  SCAZ3_RS06590 (SCAZ3_02000) pbp3 1377626..1378864 (-) 1239 WP_003046669.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SCAZ3_RS06595 (SCAZ3_02005) amiA 1379195..1381174 (+) 1980 WP_003046673.1 peptide ABC transporter substrate-binding protein Regulator
  SCAZ3_RS06600 (SCAZ3_02010) amiC 1381240..1382742 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  SCAZ3_RS06605 (SCAZ3_02015) amiD 1382742..1383668 (+) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  SCAZ3_RS06610 (SCAZ3_02020) amiE 1383677..1384747 (+) 1071 WP_003046682.1 ABC transporter ATP-binding protein Regulator
  SCAZ3_RS06615 (SCAZ3_02025) amiF 1384740..1385663 (+) 924 WP_003046685.1 ATP-binding cassette domain-containing protein Regulator
  SCAZ3_RS06620 tnpA 1385836..1386300 (+) 465 Protein_1274 IS200/IS605 family transposase -
  SCAZ3_RS06625 (SCAZ3_02035) - 1386637..1387590 (-) 954 WP_003046689.1 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56124.32 Da        Isoelectric Point: 10.1038

>NTDB_id=64787 SCAZ3_RS06600 WP_003046676.1 1381240..1382742(+) (amiC) [Streptococcus canis FSL Z3-227]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKADYENLTFQRMGYINYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPVSKKFYATRHIPIYERVWNFFSNLVVIDHPWKIQDEDNPNLARYI
RLENDKSIGWALVGSGTQHKYLVYANGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASNPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGIPASIILTIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIISLLLG
DIAMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=64787 SCAZ3_RS06600 WP_003046676.1 1381240..1382742(+) (amiC) [Streptococcus canis FSL Z3-227]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCGTTAGTGTCGGTAGTTTTGGTAACGGCCTTAACATACACCATCGT
ATATACTCTAGTCCCTGTCGGTCTTATCTTTAAACAAGATCCTAACTACAATAAGATGACGACGACGCCAGACAAAAAGG
CTGATTACGAAAACTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGCAAAGAATTGAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACAACAGAAGCCACTAGTGCTAACAAGGCTATTTATGAGAAATATATTGATTCGCTTGGCAA
TGGTTGGCAGTTAAAACGCTTCCCTGTCAGCAAAAAATTTTATGCTACTCGTCATATTCCTATTTACGAACGTGTTTGGA
ACTTCTTCTCAAACCTAGTTGTTATTGACCACCCTTGGAAGATCCAAGACGAGGACAATCCTAATTTAGCCAGATATATT
CGTCTTGAAAATGATAAATCGATTGGTTGGGCTTTAGTGGGGTCAGGGACACAACACAAATACCTTGTCTATGCTAACGG
TAAGTTTCCTTATCTTCACCAAAACTTCGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGTAACATTCCAGTTC
TTCAAGTCATTTCACAAGGACAAGGTCGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTAACTAAGAAATCGTCA
GTGGATATTTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATTACCAAGGTAAATTATGGTAAGGGAGATTC
CTACACTAAAACTATTAATAATTATGTGGATCCTTCAATGATTCATAATTCATTTGTTATTGGATTCTTTGGCGTTATGT
TTTCCTATATTGTTGGTTTACCACTTGGTTTATTTATGGCTCGCTTTAAAAATACCTACTTTGACCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTGATCTATGTTGTTCGCTTCCTAGGAAGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTTGGAGCATCTAACCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACAGTTATCTGGTTCCGTCGCTACCTTGTTGACCTTCAGGCCAGTGACTGGGTGCGTTTTGCGCGCTCAAAAGGG
TTGTCAGAATCTGAAATTTACAGAGGGCATCTCTTTAAAAATGCTATGGTCCCAATTGTGTCAGGGATTCCGGCAAGTAT
TATTCTTACCATCGGTGGAGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTGATTGATTCTA
TTAAATCAGCCAACAACTCAATGATTGTTGGATTAACCTTTATCTTTACCGTCTTGTCAATTATCTCACTCTTACTAGGA
GATATTGCTATGACACTTGTCGATCCACGTATTAAATTATCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598

Multiple sequence alignment