Detailed information NTG0064787

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R07_RS05900
• Genome accession: NZ_AP021946
• Coordinates: 1224988..1225980 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP2-S18-ESBL-08
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1219988..1230980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R07_RS05870 (WP2S18E08_11520)	ispD	1220049..1220759 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R07_RS05875 (WP2S18E08_11530)	ispF	1220759..1221238 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R07_RS05880 (WP2S18E08_11540)	truD	1221235..1222284 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H7R07_RS05885 (WP2S18E08_11550)	surE	1222265..1223026 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R07_RS05890 (WP2S18E08_11560)	pcm	1223020..1223646 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R07_RS05895 (WP2S18E08_11570)	nlpD	1223831..1224925 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H7R07_RS05900 (WP2S18E08_11580)	rpoS	1224988..1225980 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R07_RS05905 (WP2S18E08_11590)	ygbN	1226074..1227438 (-)	1365	WP_000104441.1	GntP family transporter	-
H7R07_RS05910	ygbM	1227527..1228303 (-)	777	Protein_1175	HPr family phosphocarrier protein	-
H7R07_RS05915 (WP2S18E08_11620)	ygbL	1228308..1228946 (-)	639	WP_001278994.1	aldolase	-
H7R07_RS05920 (WP2S18E08_11630)	otnK	1228943..1230205 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=64787 H7R07_RS05900 WP_000081550.1 1224988..1225980(+) (rpoS) [Escherichia coli strain WP2-S18-ESBL-08]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64787 H7R07_RS05900 WP_000081550.1 1224988..1225980(+) (rpoS) [Escherichia coli strain WP2-S18-ESBL-08]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715