Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SCAZ3_RS06610 Genome accession   NZ_AIDX01000001
Coordinates   1383677..1384747 (+) Length   356 a.a.
NCBI ID   WP_003046682.1    Uniprot ID   A0AAV3FR45
Organism   Streptococcus canis FSL Z3-227     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378677..1389747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS06595 (SCAZ3_02005) amiA 1379195..1381174 (+) 1980 WP_003046673.1 peptide ABC transporter substrate-binding protein Regulator
  SCAZ3_RS06600 (SCAZ3_02010) amiC 1381240..1382742 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  SCAZ3_RS06605 (SCAZ3_02015) amiD 1382742..1383668 (+) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  SCAZ3_RS06610 (SCAZ3_02020) amiE 1383677..1384747 (+) 1071 WP_003046682.1 ABC transporter ATP-binding protein Regulator
  SCAZ3_RS06615 (SCAZ3_02025) amiF 1384740..1385663 (+) 924 WP_003046685.1 ATP-binding cassette domain-containing protein Regulator
  SCAZ3_RS06620 tnpA 1385836..1386300 (+) 465 Protein_1274 IS200/IS605 family transposase -
  SCAZ3_RS06625 (SCAZ3_02035) - 1386637..1387590 (-) 954 WP_003046689.1 IS30 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39722.77 Da        Isoelectric Point: 5.6707

>NTDB_id=64789 SCAZ3_RS06610 WP_003046682.1 1383677..1384747(+) (amiE) [Streptococcus canis FSL Z3-227]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIIGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPEVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=64789 SCAZ3_RS06610 WP_003046682.1 1383677..1384747(+) (amiE) [Streptococcus canis FSL Z3-227]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTTGATGTGCGGGATCGTGTTTTAACGGC
GATTCGTAACGTCTCATTGGAACTTGTCGAAGGAGAAGTGCTTGCTTTTGTAGGGGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGAATGTTAGAATCCAATGGACGCATTGCCAATGGTTCTATTGTTTATCGTGGACAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCGAAAATCCGTGGTTCAAAGATTGCGACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATTGGTAGTCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGCCATGCCAAGGCAA
AAGAAATGGCGCTTGATTACATGAATAAAGTAGGAATTCCAAACGCTAAAAAACGTTTTGAAGACTACCCATTTGAATAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCAATTGCTTTAGCCTGTCGTCCAGATATTCTTATCTGTGATGAGCCTAC
AACAGCCCTTGATGTAACCATTCAAGCTCAAATCATTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATCACACATGACTTAGGTGTTGTCGCAAGTATTGCAGACAAAGTGGCTGTCATGTATGCAGGTGAAATTGTCGAA
TTCGGTACCGTTGAAGAAATTTTCTATGACCCACGCCACCCCTATACGTGGAGTCTATTGTCAAGCTTACCGCAATTAGC
TAATGAATCAGGAGAACTTTATTCCATTCCAGGAACTCCTCCATCGCTTTACTCGCCAATTATCGGAGATGCCTTTGCCC
TTCGCTCAGAATATGCTATGGTCTTGGATTTTGAAGAAACACCACCTGCTATTAGTGTTTCTGATACCCATTGGGCTAAA
ACATGGTTATTACACCCCGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAAGAA
GATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

57.567

94.663

0.545

Multiple sequence alignment