Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   SCAZ3_RS04450 Genome accession   NZ_AIDX01000001
Coordinates   966406..967629 (+) Length   407 a.a.
NCBI ID   WP_003045868.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 961406..972629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS04420 (SCAZ3_11495) recF 961846..962949 (-) 1104 WP_003045859.1 DNA replication/repair protein RecF -
  SCAZ3_RS04425 (SCAZ3_11500) yaaA 962951..963364 (-) 414 WP_003045861.1 S4 domain-containing protein YaaA -
  SCAZ3_RS04430 - 963444..964344 (-) 901 Protein_890 IS30 family transposase -
  SCAZ3_RS11595 - 964570..965394 (-) 825 Protein_891 DDE-type integrase/transposase/recombinase -
  SCAZ3_RS04445 (SCAZ3_11525) rlmH 965714..966193 (-) 480 WP_003045866.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SCAZ3_RS04450 (SCAZ3_11530) htrA 966406..967629 (+) 1224 WP_003045868.1 S1C family serine protease Regulator
  SCAZ3_RS04455 (SCAZ3_11535) spo0J 967726..968493 (+) 768 WP_003045869.1 ParB/RepB/Spo0J family partition protein Regulator
  SCAZ3_RS04460 (SCAZ3_00010) dnaA 968727..970082 (+) 1356 WP_003043737.1 chromosomal replication initiator protein DnaA -
  SCAZ3_RS04465 (SCAZ3_00015) dnaN 970236..971372 (+) 1137 WP_003043739.1 DNA polymerase III subunit beta -
  SCAZ3_RS04470 (SCAZ3_00020) - 971445..971636 (+) 192 WP_003043741.1 DUF951 domain-containing protein -
  SCAZ3_RS04475 (SCAZ3_00025) - 971764..972162 (+) 399 WP_003043743.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42661.02 Da        Isoelectric Point: 5.2154

>NTDB_id=64771 SCAZ3_RS04450 WP_003045868.1 966406..967629(+) (htrA) [Streptococcus canis FSL Z3-227]
MPTMKHILKFLGITLIGFLGGILAIVTVNNTSQQSSSTSHSGSATTSKMVFNNTTDTTKAVNVIQNAVVSVINYQDDPSS
SLSNPYIKLFGEDQAKENKDAELTIFSEGSGVIYRKDGNSAYVVTNNHVIDGAKRIEILMADGSKVVGELVGADTYSDLA
VVKISSDKIKTIAEFADSSKLNVGEVAIAIGSPLGTQYANSVTEGIVSSLSRTVTLKNENGETISTNAIQTDAAINPGNS
GGPLINIEGQVIGINSSKISSTPTGNNGNSGAVEGIGFAIPSSDVIKIIKQLETNGEVIRPALGISMVNLNDLSTNALRQ
INIPTSVTSGIVVASVQAGMPATGKLTQYDVITEIDGKAVNSISDLQSNLYGHNINDTIKVTFYRGTAKKKADIKLTETT
QDLSKAQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=64771 SCAZ3_RS04450 WP_003045868.1 966406..967629(+) (htrA) [Streptococcus canis FSL Z3-227]
ATGCCCACTATGAAACATATCTTAAAATTCTTAGGTATTACACTCATCGGATTTTTAGGAGGAATCTTGGCTATTGTTAC
AGTTAATAATACTAGTCAACAATCTTCTTCTACGTCACACTCAGGTAGTGCAACAACCAGTAAAATGGTTTTCAATAATA
CCACTGATACTACAAAAGCTGTTAACGTTATTCAAAATGCAGTGGTATCCGTTATTAATTATCAAGATGATCCTTCTTCA
TCTTTGTCTAATCCTTACATAAAACTTTTTGGAGAGGATCAGGCAAAAGAAAATAAGGATGCTGAACTAACAATTTTTAG
CGAAGGTTCTGGTGTCATTTATCGAAAAGACGGTAATTCTGCCTATGTTGTTACTAATAATCACGTTATTGATGGTGCTA
AGCGCATTGAAATCCTTATGGCTGATGGATCTAAAGTGGTTGGGGAATTAGTCGGCGCTGATACCTATTCTGACTTAGCA
GTTGTCAAAATTTCTTCTGATAAGATTAAAACAATCGCGGAATTTGCTGATTCAAGCAAACTTAATGTTGGAGAAGTAGC
TATTGCTATAGGTAGTCCTTTAGGAACTCAATATGCCAATTCTGTCACCGAAGGGATTGTTTCAAGTCTCAGTCGTACTG
TTACCTTAAAAAATGAAAATGGTGAAACTATTTCAACCAATGCTATTCAAACAGACGCTGCCATTAATCCAGGAAACTCT
GGTGGTCCACTCATTAATATCGAAGGACAAGTCATCGGAATTAATTCAAGTAAAATTTCCTCTACACCAACTGGTAATAA
TGGTAATAGCGGAGCTGTCGAAGGAATCGGCTTTGCTATTCCATCTAGTGATGTTATCAAAATTATCAAGCAATTAGAAA
CCAATGGAGAAGTCATCAGACCTGCCCTTGGTATCTCTATGGTTAACTTAAATGATTTATCAACCAATGCCCTTCGTCAA
ATCAATATTCCAACCAGTGTGACAAGTGGGATTGTAGTCGCTTCTGTTCAAGCTGGCATGCCAGCTACAGGTAAACTTAC
TCAGTACGATGTGATTACCGAAATCGATGGTAAAGCCGTCAACTCAATTAGTGATCTTCAAAGTAATTTATATGGACATA
ACATTAATGATACTATCAAAGTAACCTTTTACAGAGGGACAGCAAAGAAAAAAGCAGACATCAAATTAACGGAGACTACA
CAAGATTTAAGTAAAGCGCAATAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(109-254)

PDZ domain (PDZ_2)

(301-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.042

99.017

0.604
  htrA Streptococcus mitis NCTC 12261

54.545

100

0.545
  htrA Streptococcus pneumoniae Rx1

54.545

100

0.545
  htrA Streptococcus pneumoniae D39

54.545

100

0.545
  htrA Streptococcus pneumoniae R6

54.545

100

0.545
  htrA Streptococcus pneumoniae TIGR4

54.545

100

0.545
  htrA Streptococcus gordonii str. Challis substr. CH1

54.975

98.771

0.543

Multiple sequence alignment