Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHN37_RS02620 Genome accession   NZ_CP107878
Coordinates   578098..578700 (+) Length   200 a.a.
NCBI ID   WP_266530955.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00485     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 573098..583700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN37_RS02605 (OHN37_02585) - 575453..575935 (-) 483 WP_327666487.1 VOC family protein -
  OHN37_RS02610 (OHN37_02590) - 576060..577349 (+) 1290 WP_327666488.1 epoxide hydrolase family protein -
  OHN37_RS02615 (OHN37_02595) clpP 577458..578096 (+) 639 WP_266587716.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHN37_RS02620 (OHN37_02600) clpP 578098..578700 (+) 603 WP_266530955.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHN37_RS02625 (OHN37_02605) - 578722..579147 (-) 426 WP_266530953.1 helix-turn-helix transcriptional regulator -
  OHN37_RS02630 (OHN37_02610) - 579229..580014 (+) 786 WP_266530951.1 class I SAM-dependent methyltransferase -
  OHN37_RS02635 (OHN37_02615) - 580114..581001 (+) 888 WP_266530949.1 RNA polymerase sigma factor SigF -
  OHN37_RS02640 (OHN37_02620) - 581056..581511 (-) 456 WP_266587712.1 ATP-binding protein -
  OHN37_RS02645 (OHN37_02625) - 581657..582838 (-) 1182 WP_327666489.1 DUF6777 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21642.66 Da        Isoelectric Point: 4.7415

>NTDB_id=647689 OHN37_RS02620 WP_266530955.1 578098..578700(+) (clpP) [Streptomyces sp. NBC_00485]
MGNYTIPYVVERTANGERSSDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPENEIAIYLNSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGSRGMISDLALQAKEMVRIRAQVEEVLSRH
TRQDIPTLRADMDRDKVFTAEEAVAYGLADEVLSRRLVAV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=647689 OHN37_RS02620 WP_266530955.1 578098..578700(+) (clpP) [Streptomyces sp. NBC_00485]
ATGGGGAACTACACGATTCCGTACGTCGTCGAGCGGACCGCGAACGGCGAGCGGTCCTCCGACGTGTTCAGCCGGCTGCT
GTCCGAGCGGATCATCTTCCTCGGCACCGAGATCGACGACGGCGTCGCCAACGTCGTCATCGCGCAACTCCTCCATCTGG
AGTCGTCGGCCCCCGAGAACGAGATCGCGATCTACCTCAACTCCCCTGGCGGCTCGTTCACTTCGCTGATGGCGATCTAC
GACACGATGACGTTCGTGCAGGCGCCGATCTCGACGTTCTGCGTCGGGCAGGCGGCCTCCACGGCTGCCGTACTGCTGGC
CGGCGGGGATCCGGGGCGACGGTTCGTGCTGGAGCACGCGCGCGTACTCCTCGGGCAGCCGGCCAGCGGTGGCAGCCGGG
GCATGATCTCCGACCTCGCCCTGCAGGCAAAGGAGATGGTCCGGATCCGCGCCCAGGTGGAGGAGGTGCTGTCGCGGCAC
ACCCGCCAGGACATCCCGACGCTGCGCGCGGACATGGACCGCGACAAGGTGTTCACCGCCGAGGAGGCGGTGGCGTACGG
GCTGGCCGACGAGGTGCTGAGCCGGCGCCTCGTGGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.09

94.5

0.445
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.263

95

0.43
  clpP Streptococcus pyogenes JRS4

39.683

94.5

0.375
  clpP Streptococcus pyogenes MGAS315

39.683

94.5

0.375
  clpP Streptococcus pneumoniae D39

38.542

96

0.37
  clpP Streptococcus pneumoniae Rx1

38.542

96

0.37
  clpP Streptococcus pneumoniae R6

38.542

96

0.37
  clpP Streptococcus pneumoniae TIGR4

38.542

96

0.37
  clpP Streptococcus mutans UA159

39.153

94.5

0.37
  clpP Streptococcus thermophilus LMG 18311

37.5

96

0.36
  clpP Streptococcus thermophilus LMD-9

37.5

96

0.36