Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG852_RS33205 Genome accession   NZ_CP107772
Coordinates   7340320..7342053 (-) Length   577 a.a.
NCBI ID   WP_133909576.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7335320..7347053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS33195 (OG852_33205) - 7337212..7338363 (+) 1152 WP_133909574.1 RNA polymerase sigma factor -
  OG852_RS33200 (OG852_33210) rcrQ 7338392..7340320 (-) 1929 WP_330349879.1 ABC transporter ATP-binding protein Regulator
  OG852_RS33205 (OG852_33215) rcrP 7340320..7342053 (-) 1734 WP_133909576.1 ABC transporter ATP-binding protein Regulator
  OG852_RS33210 (OG852_33220) - 7342264..7343718 (-) 1455 WP_133909577.1 FGGY family carbohydrate kinase -
  OG852_RS33215 (OG852_33225) - 7343869..7344174 (-) 306 WP_133909578.1 YtxH domain-containing protein -
  OG852_RS33235 (OG852_33245) - 7345076..7345489 (-) 414 WP_330349880.1 PIN domain nuclease -
  OG852_RS33240 (OG852_33250) - 7345486..7345749 (-) 264 WP_133909692.1 type II toxin-antitoxin system VapB family antitoxin -
  OG852_RS33245 (OG852_33255) - 7345935..7346072 (+) 138 WP_330349881.1 hypothetical protein -
  OG852_RS33250 (OG852_33260) - 7346125..7346904 (-) 780 WP_330349882.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62676.86 Da        Isoelectric Point: 6.5087

>NTDB_id=645977 OG852_RS33205 WP_133909576.1 7340320..7342053(-) (rcrP) [Streptomyces sp. NBC_00582]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTASALGRDVRAGVFDRVQSFSSREVGQFGAPSLITRTTNDVQQIQMLSLMAFTLMASAPIMCVGGIVMALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTDLTGISLKTGNMLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGQMQIGDLTAFLAYLMQIVMSVMMATFMFMQVPRAEVCAERIQEVLGTSSSVVP
PVAPVTELRRHGHLEIRAAGFRYPGAEEPVLKAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVPVA
DVDPVLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKDFVTKLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGNHRELMTDN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=645977 OG852_RS33205 WP_133909576.1 7340320..7342053(-) (rcrP) [Streptomyces sp. NBC_00582]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCCACACTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGGGACACCGGATACA
TCCTGTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTCTACTACGGCGCC
CGGACCGCCTCCGCGCTCGGCCGGGACGTCCGGGCGGGCGTCTTCGACCGGGTGCAGTCCTTCTCCTCCCGGGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGTCCCTGATGGCGTTCA
CGCTGATGGCTTCGGCGCCGATCATGTGTGTGGGCGGCATCGTCATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTCGTGCCGGTGCTGGGCATCTGCGTGACGCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACACCGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGCAGCGGTTCCGGAAGGCCAACACCGATCTCACCGGCATCTCGCTGAAGACCGGCAACATGCTGGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCCTCGATCGCGGTCGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CCAGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGCAGGTGCCGCGCGCGGAGGTGTGCGCCGAACGCATCCAGGAGGTGCTCGGAACCTCGTCGTCCGTGGTGCCG
CCGGTGGCGCCCGTCACCGAGCTGCGGCGGCACGGTCATCTGGAGATCCGGGCGGCCGGCTTCCGCTACCCGGGTGCGGA
GGAGCCCGTCCTCAAGGCGATCGACCTGGTGGCGCGGCCCGGCGAGGTCACCGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGACTCGTCCCGCGGCTGTTCGACGCGACCGACGGGGAGGTGCTGGTCGACGGGGTGCCGGTGGCC
GACGTCGATCCGGTGCTGCTCGCCAGGACCGTCGGGCTCGTCCCGCAGAAGCCGTACCTCTTCGCGGGGACCGTCGCGAG
CAATCTGCGCTACGGCAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGACCAAGCTCGAGAACGGGCTGGACTCCCCCATCGCCCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACGCTCGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCGGCGCTCGCCCGGGAGACGGCGGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGAAACCACCGCGAGCTGATGACGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.889

100

0.38