Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STRIC_RS09725 Genome accession   NZ_AEUX02000007
Coordinates   396604..398574 (+) Length   656 a.a.
NCBI ID   WP_008090135.1    Uniprot ID   G5K5B8
Organism   Streptococcus ictaluri 707-05     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 391604..403574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS09715 (STRIC_2010) - 393449..394606 (-) 1158 WP_234944216.1 D-alanyl-D-alanine carboxypeptidase family protein -
  STRIC_RS09720 (STRIC_2011) pbp3 395025..396269 (-) 1245 WP_008089802.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  STRIC_RS09725 (STRIC_2012) amiA 396604..398574 (+) 1971 WP_008090135.1 peptide ABC transporter substrate-binding protein Regulator
  STRIC_RS09730 (STRIC_2013) amiC 398641..400125 (+) 1485 WP_008090071.1 ABC transporter permease Regulator
  STRIC_RS09735 (STRIC_2014) amiD 400128..401054 (+) 927 WP_008089700.1 oligopeptide ABC transporter permease OppC Regulator
  STRIC_RS09740 (STRIC_2015) amiE 401063..402133 (+) 1071 WP_008089761.1 ABC transporter ATP-binding protein Regulator
  STRIC_RS09745 (STRIC_2016) amiF 402126..403049 (+) 924 WP_008090244.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72072.34 Da        Isoelectric Point: 5.1149

>NTDB_id=64592 STRIC_RS09725 WP_008090135.1 396604..398574(+) (amiA) [Streptococcus ictaluri 707-05]
MKKSKWLAALGVAVLSVSVLAACGGKNSSSGSNATKTYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDKYGNLV
PSLAKNWKVSEDGLTYTYTLRDGVSWYTSDGEEYAPVTAEDFVTGLKHAVDGKSEALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKTQGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFNKNESYWD
AKNVNIDTVKLTYSDGSDPGSFYKSFDKGEFSVASLYPNAPTYKSAKKKYADNITYGMLTGDIRHLSWNLNRTAFNNSKK
DPAQQDSGKKALNNKDFRQAVMFGFDRAAFQAQKFGEDAKTKALRNMLVPPSFVTVGDENFGDVVEKELSTLGDEWKDVK
LEDAQDGFYNPEKAKAEFAKAKEALSAEGVTFPVQLDYPVDQANAVTVQEAQSFKQSVEASLGKENVQVNVIETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIISPRDGGSVVQKLGIKAGESDEVAASLGLDTYQTLLDQAAAISNDN
DARYTAYAKAQAYLTDSAVDIPVVTLGGTPRVTKSVPFSGGFAWAGAKGPLSYKQLKLQEKPVTAKQYEKAKEKWLKAQS
KSNAEYAKKLADHVKK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=64592 STRIC_RS09725 WP_008090135.1 396604..398574(+) (amiA) [Streptococcus ictaluri 707-05]
ATGAAGAAAAGTAAATGGTTAGCAGCTTTAGGAGTTGCTGTGCTGTCAGTCTCTGTTTTAGCTGCTTGTGGCGGCAAAAA
CTCATCCAGTGGTTCCAATGCAACAAAGACTTATAAATATGTCTTTGTTAATGACCCAAAATCTTTAGACTACATTCTCA
CTAATGGTGGTGGTACTACTGATGTAGCTACACAAATGGTAGACGGTCTTTTAGAAAATGACAAATACGGAAATTTAGTT
CCTTCATTAGCTAAAAACTGGAAAGTGTCAGAAGATGGCTTAACCTATACTTATACTCTTCGTGATGGGGTGTCTTGGTA
TACTTCAGATGGAGAAGAGTACGCCCCTGTTACAGCAGAAGACTTCGTAACCGGTTTGAAACATGCCGTTGACGGCAAGT
CTGAAGCTCTTTACGTTGTTGAAGACTCTATCAAAAACTTAAAAGCCTACCAAAATGGTGAAGTTGATTTTAAAGAGGTT
GGGGTAAAAGCTCTAGATGACAAGACTGTTCAATACACTTTGAACAAACCTGAATCATACTGGAACTCTAAAACTACTTA
TAGTGTCCTTTTCCCTGTAAATGCTAAATTCTTAAAAACACAAGGAAAAGATTTTGGAACGACAGACCCATCCTCAATTC
TTGTGAATGGAGCATACTTCCTCAGTGCTTTCACCTCAAAATCTTCCATGGAGTTCAATAAAAACGAAAGCTATTGGGAT
GCTAAAAATGTCAATATTGATACAGTTAAACTAACTTACTCAGATGGCTCTGATCCAGGTTCATTCTATAAGAGTTTTGA
CAAAGGTGAATTTAGTGTAGCTAGCTTATATCCGAACGCCCCAACATATAAGTCTGCTAAGAAAAAATATGCTGATAACA
TTACTTACGGAATGCTGACTGGAGATATCCGTCATTTATCTTGGAACTTAAACCGAACAGCATTTAACAATAGTAAAAAA
GACCCTGCTCAACAAGACTCAGGTAAAAAAGCGCTAAATAATAAAGACTTCCGTCAAGCTGTCATGTTTGGATTTGACCG
TGCCGCTTTCCAAGCCCAAAAATTTGGTGAAGATGCTAAGACTAAAGCTCTTCGTAACATGCTTGTGCCACCGAGTTTTG
TAACAGTTGGGGACGAAAATTTTGGAGACGTGGTTGAGAAAGAATTGTCAACACTTGGTGACGAATGGAAAGATGTTAAG
TTAGAAGATGCTCAAGATGGCTTCTACAATCCAGAAAAAGCTAAAGCAGAATTTGCAAAAGCAAAAGAAGCCCTTTCAGC
TGAAGGTGTTACTTTCCCTGTTCAATTAGATTATCCGGTTGACCAAGCTAATGCTGTAACTGTTCAAGAAGCACAATCAT
TCAAACAATCTGTTGAAGCTTCACTTGGAAAAGAAAATGTTCAAGTAAACGTTATTGAAACAGAAACATCTACACATGAA
GCACAAGGTTTCTACGCAGAAACACCAGAACAACAAGACTACGATATCATTTCTTCTTGGTGGGGACCTGACTATCAAGA
CCCACGTACTTACCTTGATATCATCAGCCCAAGAGATGGTGGTTCAGTAGTTCAAAAATTAGGTATTAAAGCAGGAGAAA
GCGATGAGGTTGCAGCTAGCCTTGGCTTAGATACTTATCAAACACTACTTGATCAAGCAGCTGCTATCTCTAATGATAAT
GATGCTCGTTATACTGCTTATGCTAAAGCACAAGCTTACTTGACTGATAGTGCAGTTGATATTCCAGTTGTTACTTTAGG
TGGAACTCCTCGTGTGACAAAATCAGTGCCATTTAGTGGTGGCTTTGCATGGGCAGGTGCCAAGGGACCATTGTCATATA
AACAATTGAAACTTCAAGAAAAACCAGTTACTGCTAAACAATACGAAAAAGCAAAAGAAAAATGGTTAAAAGCACAATCG
AAATCAAACGCTGAATACGCTAAGAAGCTAGCAGACCACGTTAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K5B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.589

100

0.52
  amiA3 Streptococcus thermophilus LMG 18311

50.151

100

0.506
  amiA3 Streptococcus thermophilus LMD-9

49.849

100

0.503

Multiple sequence alignment