Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   STRIC_RS09740 Genome accession   NZ_AEUX02000007
Coordinates   401063..402133 (+) Length   356 a.a.
NCBI ID   WP_008089761.1    Uniprot ID   G5K5C1
Organism   Streptococcus ictaluri 707-05     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 396063..407133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS09725 (STRIC_2012) amiA 396604..398574 (+) 1971 WP_008090135.1 peptide ABC transporter substrate-binding protein Regulator
  STRIC_RS09730 (STRIC_2013) amiC 398641..400125 (+) 1485 WP_008090071.1 ABC transporter permease Regulator
  STRIC_RS09735 (STRIC_2014) amiD 400128..401054 (+) 927 WP_008089700.1 oligopeptide ABC transporter permease OppC Regulator
  STRIC_RS09740 (STRIC_2015) amiE 401063..402133 (+) 1071 WP_008089761.1 ABC transporter ATP-binding protein Regulator
  STRIC_RS09745 (STRIC_2016) amiF 402126..403049 (+) 924 WP_008090244.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39709.65 Da        Isoelectric Point: 5.0465

>NTDB_id=64595 STRIC_RS09740 WP_008089761.1 401063..402133(+) (amiE) [Streptococcus ictaluri 707-05]
MTNNKNVILTAKDVVVEFDVRDRVLTAIRDVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIQYRGQEL
TDLKTNKDWAPIRGAKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKLDRKKAKKLALDYMNKVGIPDAEKRFEDFPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIKLLKDLQKEYEFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGGLYSIPGTPPSLYSPVIGDAFALRSEYAMVLDFEQAPPVFNVSETHWAK
SWLLHPDAPKVEKPEVIQDLHQKILQKISRQEEGND

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=64595 STRIC_RS09740 WP_008089761.1 401063..402133(+) (amiE) [Streptococcus ictaluri 707-05]
ATGACAAATAATAAAAATGTAATCTTAACTGCCAAAGATGTGGTAGTGGAATTTGATGTACGTGATCGTGTTTTAACAGC
TATTAGAGATGTTTCTCTAGAGTTAGTTGAAGGAGAAGTTCTCGCCTTTGTTGGAGAATCAGGCTCAGGTAAATCTGTTT
TAACCAAGACATTTACAGGAATGCTAGAATCAAATGGCCGAATTGCGAATGGTTCTATTCAATACCGTGGTCAAGAATTG
ACTGACCTGAAAACAAATAAAGATTGGGCGCCTATCCGTGGTGCAAAGATTGCTACAATCTTCCAAGATCCAATGACTAG
TTTAAGTCCGATCAAAACGATTGGAAGTCAAATTACAGAAGTCATTATTAAGCATCAAAAACTAGATCGTAAGAAAGCTA
AAAAGTTGGCTTTGGATTATATGAACAAGGTAGGTATTCCAGATGCTGAGAAGCGTTTTGAAGATTTTCCTTTTGAATAT
TCAGGAGGTATGCGTCAGCGTATCGTTATTGCCATTGCTTTAGCTTGCCGTCCGGATATTTTAATCTGTGATGAGCCAAC
TACAGCTTTGGATGTTACTATTCAAGCTCAGATTATTAAACTACTTAAAGATTTACAAAAAGAGTATGAATTTACCATCA
TTTTCATCACACATGACTTAGGAGTCGTAGCGAGTATTGCAGATAAAGTTGCTGTGATGTATGCTGGGGAAATCGTAGAA
TTTGGAACTGTTGAAGAAATTTTTTATGATCCGAGACATCCATATACTTGGAGCCTTTTATCAAGTCTTCCTCAGTTGGC
AAATGAGTCAGGTGGATTGTATTCTATTCCTGGAACGCCACCATCGTTATATTCTCCAGTTATAGGGGATGCATTTGCTT
TACGTTCAGAGTATGCAATGGTTCTTGATTTTGAACAAGCTCCTCCAGTTTTTAATGTTTCTGAAACACATTGGGCAAAA
AGTTGGCTCTTACACCCAGATGCTCCTAAAGTAGAAAAACCTGAAGTGATTCAAGACTTACATCAAAAGATTCTGCAAAA
AATATCCCGTCAGGAGGAAGGAAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K5C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.333

100

0.792
  amiE Streptococcus thermophilus LMG 18311

77.5

100

0.784
  amiE Streptococcus thermophilus LMD-9

77.5

100

0.784
  oppD Streptococcus mutans UA159

57.485

93.82

0.539

Multiple sequence alignment