Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   STRIC_RS09735 Genome accession   NZ_AEUX02000007
Coordinates   400128..401054 (+) Length   308 a.a.
NCBI ID   WP_008089700.1    Uniprot ID   G5K5C0
Organism   Streptococcus ictaluri 707-05     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 395128..406054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS09725 (STRIC_2012) amiA 396604..398574 (+) 1971 WP_008090135.1 peptide ABC transporter substrate-binding protein Regulator
  STRIC_RS09730 (STRIC_2013) amiC 398641..400125 (+) 1485 WP_008090071.1 ABC transporter permease Regulator
  STRIC_RS09735 (STRIC_2014) amiD 400128..401054 (+) 927 WP_008089700.1 oligopeptide ABC transporter permease OppC Regulator
  STRIC_RS09740 (STRIC_2015) amiE 401063..402133 (+) 1071 WP_008089761.1 ABC transporter ATP-binding protein Regulator
  STRIC_RS09745 (STRIC_2016) amiF 402126..403049 (+) 924 WP_008090244.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34677.59 Da        Isoelectric Point: 8.3390

>NTDB_id=64594 STRIC_RS09735 WP_008089700.1 400128..401054(+) (amiD) [Streptococcus ictaluri 707-05]
METIEQSKFQFVERDSRASEVIDSPAYSYWKSVFRQFFSKKSTLLMLTILVAILLMSFIYPVFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKTFDKIMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAAKNLLPQLVSVIVTMLSQMLPIYIS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFCIPLLTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=64594 STRIC_RS09735 WP_008089700.1 400128..401054(+) (amiD) [Streptococcus ictaluri 707-05]
ATGGAAACAATTGAACAATCAAAATTTCAATTTGTTGAACGTGATAGTAGAGCCTCCGAAGTCATTGATTCTCCTGCTTA
CTCTTATTGGAAGTCAGTTTTTAGACAGTTCTTTTCAAAAAAATCCACCCTTTTGATGTTGACTATTCTTGTGGCGATTT
TGCTGATGAGTTTTATTTACCCGGTCTTTGCTAATTATGACTTTGGAGATGTCAGCAATATTAATGACTTTTCTAAACGC
TATATCTGGCCAAACGCGGAGTACTGGTTCGGTACTGATAAAAATGGTCAATCTCTTTTTGATGGGGTTTGGTATGGTGC
ACGAAATTCTATTTTGATTTCGGTTATTGCTACCCTGATTAATATCACAATTGGAGTTGTCTTAGGTGCTATTTGGGGTG
TCTCAAAAACATTCGATAAAATTATGATTGAGATTTACAATATTATCTCAAACATTCCATCGATGTTAATCATTATTGTA
TTGACTTACTCTCTAGGCGCTGGGTTCTGGAATCTTATTTTAGCATTTTGTATTACGGGTTGGATTGGTGTTGCTTATTC
TATTCGTGTGCAAATCTTGCGTTACCGTGATTTAGAGTACAACCTTGCTAGTCAAACACTAGGAACACCTATGTATAAGA
TTGCGGCTAAAAATCTTTTACCTCAATTGGTTTCGGTCATTGTGACTATGTTGTCTCAAATGCTACCAATTTATATTTCA
TCTGAAGCCTTTTTATCTTTCTTTGGAATAGGGCTTCCGACAACAACACCAAGTTTAGGGCGTTTAATTGCTAATTATTC
TAGCAACTTAACAACAAATGCTTATCTCTTTTGTATTCCTTTGTTGACTTTGATTTTAGTTTCGTTACCACTTTACATTG
TCGGACAAAATCTAGCTGATGCTAGTGATCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K5C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

74.026

100

0.74
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment