Detailed information NTG0645864

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OHN38_RS17130
• Genome accession: NZ_CP107765
• Coordinates: 3783194..3784192 (-)
• Length: 332 a.a.
• NCBI ID: WP_016436496.1
• Uniprot ID: A0ABS9XGC4
• Organism: Streptomyces sp. NBC_00588
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3778194..3789192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHN38_RS17110 (OHN38_17090)	-	3778456..3779217 (-)	762	WP_016436492.1	DeoR/GlpR family DNA-binding transcription regulator	-
OHN38_RS17115 (OHN38_17095)	-	3779401..3780954 (-)	1554	WP_330282597.1	MFS transporter	-
OHN38_RS17120 (OHN38_17100)	-	3781075..3782043 (+)	969	WP_330282598.1	YafY family protein	-
OHN38_RS17125 (OHN38_17105)	-	3782040..3782696 (-)	657	WP_330285255.1	TetR family transcriptional regulator	-
OHN38_RS17130 (OHN38_17110)	rpoS	3783194..3784192 (-)	999	WP_016436496.1	sigma-70 family RNA polymerase sigma factor	Regulator
OHN38_RS17135 (OHN38_17115)	-	3784387..3784905 (+)	519	WP_242709925.1	GNAT family N-acetyltransferase	-
OHN38_RS17140 (OHN38_17120)	-	3784922..3785713 (-)	792	WP_016436498.1	class III extradiol ring-cleavage dioxygenase	-
OHN38_RS17145 (OHN38_17125)	-	3785833..3786327 (+)	495	WP_242709926.1	MarR family transcriptional regulator	-
OHN38_RS17150 (OHN38_17130)	-	3786436..3787977 (-)	1542	WP_016436500.1	MFS transporter	-
OHN38_RS17155 (OHN38_17135)	-	3788090..3788743 (-)	654	WP_242709927.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37225.94 Da
• Isoelectric Point: 5.1429

>NTDB_id=645864 OHN38_RS17130 WP_016436496.1 3783194..3784192(-) (rpoS) [Streptomyces sp. NBC_00588]
MATRAVARRKSATGETADAASSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGYEESKAE
ASREELQALVDDGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNADRVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDHLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=645864 OHN38_RS17130 WP_016436496.1 3783194..3784192(-) (rpoS) [Streptomyces sp. NBC_00588]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACGGCCGACGCGGCAAGCAGTGTTCGCGCCCACGC
CGGCGAGATCGCCGACCGTGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGATCATTGAGGCGGGTGTGTTCGCGCGACAGGTTCTCGACGGGTACGAGGAGTCCAAGGCCGAG
GCCTCCCGCGAGGAGCTCCAGGCCCTCGTGGACGACGGCGAGCGGGCGAAGGACATCTTCATCCGCTCCAACCTCCGCCT
GGTCGTGGCGGTGGCCCGGCGCTACCCCCGTAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TGCGGGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGTCAGGCCATC
ACCCGCTCGATAGCGGACCAGTCGCGGACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCGGCGGAGCTCGGTTCGAACGCGGACC
GGGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTCGAGGACACCTCGGCGGTCTCGCCGGAGCAGTCCGTCCTGACACTGCTGCGCAGCGAGGAGCTCGACCA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACGGAGGTCGGCAAGGAGCACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCTCTGCTGGAGCTGAAG
AAGCTGGCGCGCGACACCGGCTTCGAAGCGGCGGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.134	90.06	0.361