Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0Y25_RS19650 Genome accession   NZ_CP090588
Coordinates   4338833..4339381 (-) Length   182 a.a.
NCBI ID   WP_256542433.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain AK042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4333833..4344381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y25_RS19630 (L0Y25_19605) - 4334666..4336399 (-) 1734 WP_256542430.1 PilN family type IVB pilus formation outer membrane protein -
  L0Y25_RS19635 (L0Y25_19610) pilM 4336409..4336846 (-) 438 WP_103160204.1 type IV pilus biogenesis protein PilM -
  L0Y25_RS19640 (L0Y25_19615) - 4336848..4338152 (-) 1305 WP_256542431.1 TcpQ domain-containing protein -
  L0Y25_RS19645 (L0Y25_19620) - 4338309..4338746 (-) 438 WP_256542432.1 DUF29 domain-containing protein -
  L0Y25_RS19650 (L0Y25_19625) ssb 4338833..4339381 (-) 549 WP_256542433.1 single-stranded DNA-binding protein Machinery gene
  L0Y25_RS19655 (L0Y25_19630) - 4339441..4339950 (-) 510 WP_256542434.1 STY4534 family ICE replication protein -
  L0Y25_RS19660 (L0Y25_19635) - 4340586..4342595 (-) 2010 WP_256542435.1 DNA topoisomerase III -
  L0Y25_RS19665 (L0Y25_19640) - 4342610..4343362 (-) 753 WP_256542436.1 PFL_4669 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20066.37 Da        Isoelectric Point: 7.1665

>NTDB_id=643660 L0Y25_RS19650 WP_256542433.1 4338833..4339381(-) (ssb) [Pectobacterium aroidearum strain AK042]
MASRGVNKVTLIGFLGQDPEVRYMPNGNAVTGITMATSETWRDKQTGEEKERTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDSAGVDRWTTEIVVSQRGTMQMLGSRPNDGNNNQSATSSSWGKPQQPAAPAHSGSPQSQRPAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAIS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=643660 L0Y25_RS19650 WP_256542433.1 4338833..4339381(-) (ssb) [Pectobacterium aroidearum strain AK042]
ATGGCTTCACGTGGCGTAAATAAAGTAACACTTATCGGATTTTTGGGGCAGGATCCCGAAGTCCGTTATATGCCAAATGG
TAACGCAGTTACTGGTATTACTATGGCAACATCAGAAACCTGGCGCGATAAACAAACTGGCGAAGAGAAAGAGCGTACTG
AATGGCACCGTGTGGTGATATTCGGCAAGCTTGCAGAAATTGCCGGAGAGTATTTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGGCAACTTCAAACGCGTAAGTGGCAAGACAGCGCAGGTGTAGATCGTTGGACGACTGAAATTGTAGTCAGCCAGCG
TGGCACGATGCAGATGTTAGGATCTCGCCCGAACGACGGAAATAACAACCAAAGTGCGACAAGCTCGTCATGGGGAAAAC
CTCAGCAGCCAGCAGCACCGGCACACAGTGGTTCCCCTCAGTCTCAACGTCCAGCAGGCAATGAACCGCCGATGGATTTT
GACGACGACATACCCTTCCTGGGGTTTGGCTATGGTGTATGTCGTAAAGCGATTTATGCCATTTCGTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.797

97.253

0.659
  ssb Glaesserella parasuis strain SC1401

49.171

99.451

0.489
  ssb Neisseria meningitidis MC58

46.591

96.703

0.451
  ssb Neisseria gonorrhoeae MS11

46.067

97.802

0.451