Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LXM91_RS14995 Genome accession   NZ_CP090477
Coordinates   3031710..3032354 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain W0101     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3026710..3037354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS14960 (LXM91_14960) - 3027895..3028326 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  LXM91_RS14965 (LXM91_14965) - 3028326..3028667 (+) 342 WP_039254062.1 Na(+)/H(+) antiporter subunit C -
  LXM91_RS14970 (LXM91_14970) - 3028660..3030141 (+) 1482 WP_039254060.1 Na+/H+ antiporter subunit D -
  LXM91_RS14975 (LXM91_14975) - 3030147..3030623 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  LXM91_RS14980 (LXM91_14980) - 3030623..3030907 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  LXM91_RS14985 (LXM91_14985) mnhG 3030891..3031265 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LXM91_RS14990 (LXM91_14990) - 3031305..3031688 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  LXM91_RS14995 (LXM91_14995) comA 3031710..3032354 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LXM91_RS15000 (LXM91_15000) comP 3032435..3034726 (-) 2292 WP_039254056.1 histidine kinase Regulator
  LXM91_RS15005 (LXM91_15005) comX 3034738..3034902 (-) 165 WP_007613432.1 competence pheromone ComX -
  LXM91_RS15010 (LXM91_15010) - 3034902..3035813 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  LXM91_RS15015 (LXM91_15015) degQ 3035965..3036105 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LXM91_RS15020 (LXM91_15020) - 3036571..3036912 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=642722 LXM91_RS14995 WP_003152052.1 3031710..3032354(-) (comA) [Bacillus amyloliquefaciens strain W0101]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=642722 LXM91_RS14995 WP_003152052.1 3031710..3032354(-) (comA) [Bacillus amyloliquefaciens strain W0101]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACTCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864