Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LUR16_RS08210 Genome accession   NZ_CP090475
Coordinates   1692736..1693602 (-) Length   288 a.a.
NCBI ID   WP_011275951.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain BC5211     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1674936..1723269 1692736..1693602 within 0


Gene organization within MGE regions


Location: 1674936..1723269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUR16_RS08140 - 1676796..1678496 (-) 1701 WP_011275937.1 proline--tRNA ligase -
  LUR16_RS08145 rseP 1678515..1679801 (-) 1287 WP_011275938.1 RIP metalloprotease RseP -
  LUR16_RS08150 - 1680012..1680794 (-) 783 WP_011275939.1 phosphatidate cytidylyltransferase -
  LUR16_RS08155 - 1680798..1681568 (-) 771 WP_011275940.1 isoprenyl transferase -
  LUR16_RS08160 frr 1681794..1682348 (-) 555 WP_011275941.1 ribosome recycling factor -
  LUR16_RS08165 pyrH 1682366..1683088 (-) 723 WP_011275942.1 UMP kinase -
  LUR16_RS08170 tsf 1683225..1684103 (-) 879 WP_011275943.1 translation elongation factor Ts -
  LUR16_RS08175 rpsB 1684261..1685049 (-) 789 WP_011275944.1 30S ribosomal protein S2 -
  LUR16_RS08180 codY 1685316..1686089 (-) 774 WP_076689827.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  LUR16_RS08185 hslU 1686111..1687514 (-) 1404 WP_011275946.1 ATP-dependent protease ATPase subunit HslU -
  LUR16_RS08190 hslV 1687573..1688118 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  LUR16_RS08195 xerC 1688119..1688982 (-) 864 WP_210423028.1 tyrosine recombinase XerC -
  LUR16_RS08200 trmFO 1689157..1690464 (-) 1308 WP_011275949.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LUR16_RS08205 topA 1690488..1692557 (-) 2070 WP_076689825.1 type I DNA topoisomerase -
  LUR16_RS08210 dprA 1692736..1693602 (-) 867 WP_011275951.1 DNA-processing protein DprA Machinery gene
  LUR16_RS08215 - 1693821..1695050 (-) 1230 WP_011275952.1 aminoacyltransferase -
  LUR16_RS08220 sucD 1695350..1696255 (-) 906 WP_011275953.1 succinate--CoA ligase subunit alpha -
  LUR16_RS08225 sucC 1696277..1697443 (-) 1167 WP_011275954.1 ADP-forming succinate--CoA ligase subunit beta -
  LUR16_RS08230 - 1697555..1698322 (-) 768 WP_011275955.1 ribonuclease HII -
  LUR16_RS08235 ylqF 1698306..1699190 (-) 885 WP_011275956.1 ribosome biogenesis GTPase YlqF -
  LUR16_RS08240 - 1699433..1702027 (+) 2595 WP_011275957.1 YfhO family protein -
  LUR16_RS08245 - 1702029..1704638 (+) 2610 WP_076689823.1 YfhO family protein -
  LUR16_RS08250 rplS 1704795..1705145 (-) 351 WP_011275959.1 50S ribosomal protein L19 -
  LUR16_RS08255 trmD 1705250..1705987 (-) 738 WP_011275960.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LUR16_RS08260 rimM 1705987..1706490 (-) 504 WP_053020112.1 ribosome maturation factor RimM -
  LUR16_RS08265 rpsP 1706609..1706884 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  LUR16_RS08270 ffh 1707131..1708501 (-) 1371 WP_011275963.1 signal recognition particle protein -
  LUR16_RS08275 - 1708527..1708859 (-) 333 WP_011275964.1 putative DNA-binding protein -
  LUR16_RS08280 ftsY 1708846..1710069 (-) 1224 WP_011275965.1 signal recognition particle-docking protein FtsY -
  LUR16_RS08285 smc 1710066..1713635 (-) 3570 WP_076689821.1 chromosome segregation protein SMC -
  LUR16_RS08290 rnc 1713720..1714472 (-) 753 WP_210423027.1 ribonuclease III -
  LUR16_RS08295 - 1714543..1714776 (-) 234 WP_001830184.1 acyl carrier protein -
  LUR16_RS08300 fabG 1714889..1715626 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  LUR16_RS08305 fabD 1715616..1716545 (-) 930 WP_011275969.1 ACP S-malonyltransferase -
  LUR16_RS08310 plsX 1716538..1717524 (-) 987 WP_011275970.1 phosphate acyltransferase PlsX -
  LUR16_RS08315 fapR 1717526..1718086 (-) 561 WP_011275971.1 transcription factor FapR -
  LUR16_RS08320 recG 1718222..1720273 (-) 2052 WP_016930693.1 ATP-dependent DNA helicase RecG -
  LUR16_RS08325 - 1720428..1721228 (-) 801 WP_011275973.1 thermonuclease family protein -
  LUR16_RS08330 fakA 1721414..1723072 (-) 1659 WP_011275974.1 fatty acid kinase catalytic subunit FakA -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33058.12 Da        Isoelectric Point: 9.4081

>NTDB_id=642638 LUR16_RS08210 WP_011275951.1 1692736..1693602(-) (dprA) [Staphylococcus haemolyticus strain BC5211]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPEFFKFSYTDQIDSIKNWDKLFHKGDFIDRYNHLNDKEILSFLNQHKISFVT
PFNANYPRLLKEIYDYPFVLFYQGDPQLLTSPNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEVKGLVISEYPPFTSVRRYHFPQRNRLISGLSQGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=642638 LUR16_RS08210 WP_011275951.1 1692736..1693602(-) (dprA) [Staphylococcus haemolyticus strain BC5211]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGTTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGAATTTTTTAAATTCTCTTATACTGATCAAATAGATTCAATAAAAAATTGGGACAAGTTATTTCATAAAGGTG
ATTTTATTGATCGATATAATCATTTAAATGATAAAGAAATTTTGTCATTTTTGAATCAACACAAGATAAGTTTTGTAACA
CCGTTTAACGCTAATTATCCTCGACTATTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCA
ATTATTAACATCCCCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAGTACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACCATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATTGCACATCATTTT
GCTATAGAGTATCAATTACCTACTATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGTAAAAGGTTTAGTTATTAGTGAATATCCGCCATTCACTAGTGTTAGGCGATATCACTTTCCGC
AACGCAATCGTTTGATAAGCGGTCTTTCACAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACTAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATTCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

49.825

98.958

0.493
  dprA Staphylococcus aureus N315

49.825

98.958

0.493
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

36.395

100

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

36.395

100

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

36.395

100

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

36.395

100

0.372
  dprA Streptococcus mutans UA159

37.544

98.958

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

35.374

100

0.361
  dprA Legionella pneumophila strain ERS1305867

42.105

85.764

0.361