Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LXM48_RS00550 | Genome accession | NZ_CP090180 |
| Coordinates | 114648..115136 (+) | Length | 162 a.a. |
| NCBI ID | WP_234304424.1 | Uniprot ID | - |
| Organism | Acinetobacter johnsonii strain DJ-Red | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 109648..120136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXM48_RS00530 (LXM48_00530) | - | 111169..112047 (+) | 879 | WP_234304421.1 | metal-dependent hydrolase | - |
| LXM48_RS00535 (LXM48_00535) | - | 112198..112788 (+) | 591 | WP_125280904.1 | LemA family protein | - |
| LXM48_RS00540 (LXM48_00540) | - | 112826..113899 (+) | 1074 | WP_234304422.1 | TPM domain-containing protein | - |
| LXM48_RS00545 (LXM48_00545) | - | 113893..114453 (+) | 561 | WP_234304423.1 | TPM domain-containing protein | - |
| LXM48_RS00550 (LXM48_00550) | pilA | 114648..115136 (+) | 489 | WP_234304424.1 | pilin | Machinery gene |
| LXM48_RS00555 (LXM48_00555) | - | 115198..116883 (+) | 1686 | WP_234304425.1 | Wzy polymerase domain-containing protein | - |
| LXM48_RS00560 (LXM48_00560) | bfr | 116948..117412 (-) | 465 | WP_234304426.1 | bacterioferritin | - |
| LXM48_RS00565 (LXM48_00565) | - | 117666..117860 (-) | 195 | WP_010327639.1 | bacterioferritin-associated ferredoxin | - |
| LXM48_RS00570 (LXM48_00570) | - | 118015..118398 (-) | 384 | WP_004691470.1 | RidA family protein | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 16215.43 Da Isoelectric Point: 9.0791
>NTDB_id=641005 LXM48_RS00550 WP_234304424.1 114648..115136(+) (pilA) [Acinetobacter johnsonii strain DJ-Red]
MNAQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRAKVTEGLSLASAAKTAVSENAASAAPFASGWTQPSATANVSSVA
INSTNGRITIAYTTAVAPSSANTLILTPLNGARTNGVALVAGTPPSAGSITWVCASAGSTISNNAVGKGTLESKYTPAEC
RN
MNAQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRAKVTEGLSLASAAKTAVSENAASAAPFASGWTQPSATANVSSVA
INSTNGRITIAYTTAVAPSSANTLILTPLNGARTNGVALVAGTPPSAGSITWVCASAGSTISNNAVGKGTLESKYTPAEC
RN
Nucleotide
Download Length: 489 bp
>NTDB_id=641005 LXM48_RS00550 WP_234304424.1 114648..115136(+) (pilA) [Acinetobacter johnsonii strain DJ-Red]
ATGAACGCTCAAAAGGGTTTCACTCTTATTGAATTAATGATCGTTGTTGCAATTATCGGTATTTTGGCTGCTGTAGCGAT
TCCTGCATATCAAGACTATACAGTGCGTGCAAAAGTGACAGAAGGTTTGTCATTAGCTTCTGCTGCTAAAACGGCAGTAT
CTGAAAATGCTGCAAGTGCTGCACCTTTTGCTAGTGGTTGGACACAACCATCGGCAACAGCAAATGTATCATCGGTTGCT
ATTAACTCAACAAATGGTCGTATTACCATTGCTTATACTACTGCTGTAGCACCATCTTCTGCAAACACCTTAATTTTGAC
TCCTTTAAATGGTGCTAGAACAAATGGTGTTGCTTTAGTGGCTGGAACACCTCCTTCAGCAGGTTCAATTACATGGGTGT
GTGCGTCAGCTGGTTCGACAATTTCGAATAATGCTGTAGGAAAAGGTACACTTGAATCTAAATATACACCTGCTGAATGC
CGTAACTAA
ATGAACGCTCAAAAGGGTTTCACTCTTATTGAATTAATGATCGTTGTTGCAATTATCGGTATTTTGGCTGCTGTAGCGAT
TCCTGCATATCAAGACTATACAGTGCGTGCAAAAGTGACAGAAGGTTTGTCATTAGCTTCTGCTGCTAAAACGGCAGTAT
CTGAAAATGCTGCAAGTGCTGCACCTTTTGCTAGTGGTTGGACACAACCATCGGCAACAGCAAATGTATCATCGGTTGCT
ATTAACTCAACAAATGGTCGTATTACCATTGCTTATACTACTGCTGTAGCACCATCTTCTGCAAACACCTTAATTTTGAC
TCCTTTAAATGGTGCTAGAACAAATGGTGTTGCTTTAGTGGCTGGAACACCTCCTTCAGCAGGTTCAATTACATGGGTGT
GTGCGTCAGCTGGTTCGACAATTTCGAATAATGCTGTAGGAAAAGGTACACTTGAATCTAAATATACACCTGCTGAATGC
CGTAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
52.096 |
100 |
0.537 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.534 |
100 |
0.519 |
| pilA2 | Legionella pneumophila str. Paris |
50.92 |
100 |
0.512 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
41.579 |
100 |
0.488 |
| comP | Acinetobacter baylyi ADP1 |
43.478 |
99.383 |
0.432 |
| pilE | Neisseria gonorrhoeae MS11 |
35.057 |
100 |
0.377 |