Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   LXA49_RS10035 Genome accession   NZ_CP089949
Coordinates   1941420..1941866 (-) Length   148 a.a.
NCBI ID   WP_001809944.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN75752     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1936420..1946866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS10010 (LXA49_09995) - 1937151..1937975 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  LXA49_RS10015 (LXA49_10000) rnpA 1937950..1938321 (-) 372 WP_000739246.1 ribonuclease P protein component -
  LXA49_RS11180 - 1938338..1938469 (-) 132 WP_000768904.1 hypothetical protein -
  LXA49_RS10020 (LXA49_10005) - 1938470..1939660 (-) 1191 WP_000167765.1 acetate kinase -
  LXA49_RS10025 (LXA49_10010) comYH 1939711..1940664 (-) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  LXA49_RS10030 (LXA49_10015) - 1940725..1941317 (-) 593 Protein_1976 methyltransferase domain-containing protein -
  LXA49_RS10035 (LXA49_10020) comGG/cglG 1941420..1941866 (-) 447 WP_001809944.1 competence type IV pilus minor pilin ComGG Machinery gene
  LXA49_RS10040 (LXA49_10025) comGF/cglF 1941844..1942305 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  LXA49_RS10045 (LXA49_10030) comGE/cglE 1942268..1942570 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  LXA49_RS10050 (LXA49_10035) comGD/cglD 1942533..1942967 (-) 435 WP_033606693.1 competence type IV pilus minor pilin ComGD Machinery gene
  LXA49_RS10055 (LXA49_10040) comGC/cglC 1942930..1943253 (-) 324 WP_000738628.1 comG operon protein ComGC Machinery gene
  LXA49_RS10060 (LXA49_10045) comGB/cglB 1943255..1944271 (-) 1017 WP_078130737.1 competence type IV pilus assembly protein ComGB Machinery gene
  LXA49_RS10065 (LXA49_10050) comGA/cglA/cilD 1944219..1945160 (-) 942 WP_000249536.1 competence type IV pilus ATPase ComGA Machinery gene
  LXA49_RS10070 (LXA49_10055) - 1945236..1945601 (-) 366 WP_000286415.1 DUF1033 family protein -
  LXA49_RS10075 (LXA49_10060) - 1945752..1946810 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17318.00 Da        Isoelectric Point: 10.4944

>NTDB_id=639445 LXA49_RS10035 WP_001809944.1 1941420..1941866(-) (comGG/cglG) [Streptococcus pneumoniae strain SN75752]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFSSVKIKEEKTDKKEEVVTDSSEKAEKKNQKRSLKRKRIHSQFNYNALNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=639445 LXA49_RS10035 WP_001809944.1 1941420..1941866(-) (comGG/cglG) [Streptococcus pneumoniae strain SN75752]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTTCTTCAGTCAAAATCAAAGAAGAGAA
AACGGATAAAAAGGAAGAGGTAGTGACTGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCATAGTCAATTCAACTATAATGCGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

95.726

79.054

0.757

  comGG/cglG Streptococcus pneumoniae D39

95.726

79.054

0.757

  comGG/cglG Streptococcus pneumoniae R6

95.726

79.054

0.757

  comGG/cglG Streptococcus pneumoniae TIGR4

95.726

79.054

0.757

  comGG/cglG Streptococcus mitis NCTC 12261

90.984

82.432

0.75

  comGG/cglG Streptococcus mitis SK321

87.705

82.432

0.723