Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LTQ03_RS02480 Genome accession   NZ_CP089201
Coordinates   540622..540921 (-) Length   99 a.a.
NCBI ID   WP_102494880.1    Uniprot ID   -
Organism   Vibrio splendidus strain 1_C04a     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535622..545921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS02455 (LTQ03_02455) - 535900..537132 (+) 1233 WP_004736094.1 pyridoxal phosphate-dependent aminotransferase -
  LTQ03_RS02460 (LTQ03_02460) yfbR 537464..538048 (+) 585 WP_065104861.1 5'-deoxynucleotidase -
  LTQ03_RS02465 (LTQ03_02465) - 538104..539447 (+) 1344 WP_243583929.1 anti-phage deoxyguanosine triphosphatase -
  LTQ03_RS02470 (LTQ03_02470) - 539474..540073 (-) 600 WP_102494881.1 tRNA-uridine aminocarboxypropyltransferase -
  LTQ03_RS02475 (LTQ03_02475) rrtA 540083..540631 (+) 549 WP_065682117.1 rhombosortase -
  LTQ03_RS02480 (LTQ03_02480) comEA 540622..540921 (-) 300 WP_102494880.1 ComEA family DNA-binding protein Machinery gene
  LTQ03_RS02485 (LTQ03_02485) ppiD 541183..543048 (-) 1866 WP_243583930.1 peptidylprolyl isomerase -
  LTQ03_RS02490 (LTQ03_02490) - 543268..543561 (-) 294 WP_012604504.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10727.11 Da        Isoelectric Point: 4.2092

>NTDB_id=635640 LTQ03_RS02480 WP_102494880.1 540622..540921(-) (comEA) [Vibrio splendidus strain 1_C04a]
MRTIYSTLLLSFLMALSSPAFSDSPTKAELYDGIEITVNINSATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLV
SVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=635640 LTQ03_RS02480 WP_102494880.1 540622..540921(-) (comEA) [Vibrio splendidus strain 1_C04a]
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGGCCCTGAGCTCCCCAGCGTTCTCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATTGAGATTACGGTAAACATCAATTCTGCGACGGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTTGGGGACAAGAAAGCCCAAGAGATCGTCGATTATAGAGATCAAAACGGTGCGTTTACGACTGCTGATGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCGACGGTTGAAAAGAACCGCGAAAGAATTCAACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

56.522

92.929

0.525
  comEA Vibrio cholerae C6706

53.608

97.98

0.525
  comEA Vibrio cholerae strain A1552

53.608

97.98

0.525
  comEA Vibrio parahaemolyticus RIMD 2210633

54.945

91.919

0.505
  comEA Acinetobacter baylyi ADP1

52.439

82.828

0.434
  comE1/comEA Haemophilus influenzae Rd KW20

36.036

100

0.404