Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LSO60_RS15035 Genome accession   NZ_CP089051
Coordinates   3167993..3170122 (-) Length   709 a.a.
NCBI ID   WP_263513413.1    Uniprot ID   A0AA46NYK5
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3162993..3175122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS15020 (LSO60_15000) - 3165426..3166286 (-) 861 WP_263512518.1 hypothetical protein -
  LSO60_RS15025 (LSO60_15005) aroB 3166300..3167382 (-) 1083 WP_263512519.1 3-dehydroquinate synthase -
  LSO60_RS15030 (LSO60_15010) aroK 3167414..3167956 (-) 543 WP_263512520.1 shikimate kinase AroK -
  LSO60_RS15035 (LSO60_15015) pilQ 3167993..3170122 (-) 2130 WP_263513413.1 type IV pilus secretin PilQ Machinery gene
  LSO60_RS15040 (LSO60_15020) pilP 3170185..3170709 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO60_RS15045 (LSO60_15025) pilO 3170709..3171422 (-) 714 WP_263512521.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO60_RS15050 (LSO60_15030) pilN 3171419..3172057 (-) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  LSO60_RS15055 (LSO60_15035) pilM 3172057..3173115 (-) 1059 WP_262476554.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 76705.07 Da        Isoelectric Point: 5.1342

>NTDB_id=634832 LSO60_RS15035 WP_263513413.1 3167993..3170122(-) (pilQ) [Acinetobacter ursingii strain RIVM_C010559]
MNHTVRQFSMGAVAFAIMQVASAQVSITNIVPMNIAGQGTEIRVMFNGLPPQPQAYQMEQPSRLILDFDKAQQGLKQNTI
AVATNEASSVDVVSDAQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQQVMTPAAVAMPAATNIQQGVSNIGFQRGSQGE
GQVVIDLLGSNTPVDVQQQGSKIVVRMLGNKIPTNLARRLNVNDFATPVASVDAYNEGGNGVIVVQSAGSYEYMAYQAEN
KLTLSLKRPVDRNQLGARSTPNYSGKKISLDFQDIEVRRVLQLLADFTDINMVTADSVQGNITLRLKDVPWDQALDIILK
TKNLDKRRNGNVIWIAPVTELTKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLMTQGKNSSSSGSSSGGSEPLG
DSVGSLLSPRGTVSIDPRTNTLIINDTAQKIDQIRKMIDLLDVRVKQVMVEARIVRASTSFTKEMGVKWGVLSQGITKNN
DLLVGGSETTLWNLRDPDDDGKYTIERPDNLNVDLGVTSAGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMT
ADKQTAKVATGQEVPYQSTTNSAAGSTATTSFKEALLSLEVTPSITPDGKIQMLLNISKDSVADQAPNGELILNKNTINT
NVLVDNGETVILGGVFEQTTANQQTKVPFLGDLPWVGRLFRKDLKSDNKQELLIFVTPRIVNDTQVRNQ

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=634832 LSO60_RS15035 WP_263513413.1 3167993..3170122(-) (pilQ) [Acinetobacter ursingii strain RIVM_C010559]
ATGAATCATACAGTTCGACAGTTTTCAATGGGTGCGGTTGCATTTGCAATCATGCAAGTGGCTAGTGCGCAGGTCAGTAT
TACCAATATTGTTCCCATGAATATCGCAGGACAGGGGACAGAAATCCGTGTGATGTTCAATGGTTTGCCACCGCAACCAC
AAGCATATCAAATGGAACAGCCATCCAGACTGATTTTGGATTTTGATAAGGCTCAGCAGGGTCTTAAACAAAATACTATT
GCTGTCGCAACCAACGAAGCCAGTAGTGTCGATGTAGTATCTGATGCACAGCGTTCGCGTCTAACGGTCAATTTAAAAGA
TGCGGGTGCATTTACCACTCGTGTTGAAGGTAATACTTTTATTTTAAAGATTAATAGTGCCCAACAAGTAATGACTCCTG
CCGCTGTTGCTATGCCAGCGGCAACGAATATTCAGCAAGGGGTTTCTAATATTGGTTTTCAGCGCGGCTCGCAGGGCGAA
GGTCAGGTTGTTATCGATTTGCTTGGCAGTAATACGCCTGTCGATGTACAACAACAAGGCAGTAAAATTGTTGTGCGTAT
GCTAGGAAATAAAATTCCGACCAATTTGGCACGACGTTTAAATGTCAATGATTTTGCTACGCCAGTTGCGAGTGTGGATG
CCTATAATGAAGGCGGCAATGGGGTAATCGTGGTGCAATCTGCTGGTAGCTATGAATATATGGCATATCAGGCAGAAAAT
AAACTGACTTTAAGCCTTAAACGTCCAGTGGATCGTAATCAGTTAGGCGCACGTTCTACACCAAATTATAGTGGTAAAAA
AATCTCTCTAGATTTCCAGGATATTGAAGTGCGTCGTGTACTTCAGTTATTGGCAGATTTTACTGATATCAATATGGTGA
CGGCAGATTCAGTACAGGGCAATATTACTCTACGCTTAAAGGATGTACCGTGGGATCAGGCCTTAGATATTATTTTAAAA
ACTAAAAATCTGGATAAACGCCGTAACGGTAATGTGATCTGGATTGCGCCTGTTACTGAATTAACCAAAGCTGAAGAAGA
AGAAGCCAAAGCGATTGCGCAAAGTGTCAAGCTTGCACCATTACAAACTGAATATATTCAACTCAGTTATGCGAAAGCCG
CCGATATTGAAAAATTGATGACTCAAGGTAAAAACAGCTCAAGCTCAGGTTCATCATCAGGTGGTTCAGAGCCGCTAGGT
GATAGTGTTGGTAGTTTGCTGAGTCCAAGAGGTACTGTGTCGATTGATCCGCGGACCAATACTTTAATCATTAATGATAC
TGCACAGAAAATTGATCAGATTCGTAAAATGATTGATTTATTGGATGTGCGTGTTAAGCAGGTGATGGTGGAGGCGCGGA
TTGTGCGAGCAAGCACTTCATTTACCAAAGAAATGGGGGTGAAGTGGGGGGTGCTTTCACAGGGGATTACCAAAAATAAT
GATTTGTTGGTCGGTGGTAGTGAAACGACTTTATGGAATCTGCGTGATCCTGATGACGATGGTAAATACACCATCGAACG
CCCAGATAACCTGAATGTAGATTTAGGTGTCACTTCAGCGGGTGCGAGTAAAATTGCCTTTGGCTTAATTAGTTTGTCTG
ACTTTATGCTGGATTTGGAATTATCTGCATTACAAGCAGATGGTTATGGTGAAGTGATTTCAACGCCAAAAGTCATGACT
GCCGATAAACAAACTGCCAAAGTTGCAACGGGTCAGGAAGTGCCTTATCAATCCACCACAAACTCTGCGGCGGGTTCCAC
TGCAACCACTTCATTTAAAGAAGCTTTACTCAGTCTTGAAGTCACACCAAGTATTACACCTGATGGTAAAATCCAGATGC
TGTTGAATATTTCCAAAGACTCAGTTGCTGACCAAGCACCAAATGGTGAATTGATCTTGAATAAAAACACGATTAATACC
AATGTGTTGGTCGATAATGGTGAAACGGTGATTCTGGGCGGGGTGTTTGAACAAACAACAGCTAATCAACAGACGAAAGT
GCCGTTCTTGGGAGACTTACCTTGGGTGGGACGTTTATTTAGAAAAGATCTCAAATCAGATAATAAACAAGAGTTGTTGA
TCTTCGTTACCCCGAGAATTGTTAATGACACTCAGGTGAGAAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(364-447)

AMIN domain (AMIN)

(38-121)

Bacterial type II and III secretion system protein (Secretin)

(543-701)

Secretin and TonB N terminus short domain (STN)

(294-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

81.405

100

0.834
  pilQ Acinetobacter baumannii strain A118

81.267

100

0.832
  comQ Acinetobacter baylyi ADP1

79.916

100

0.803
  pilQ Pseudomonas aeruginosa PAK

41.374

100

0.416