Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LSO60_RS15040 Genome accession   NZ_CP089051
Coordinates   3170185..3170709 (-) Length   174 a.a.
NCBI ID   WP_004991753.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3165185..3175709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS15020 (LSO60_15000) - 3165426..3166286 (-) 861 WP_263512518.1 hypothetical protein -
  LSO60_RS15025 (LSO60_15005) aroB 3166300..3167382 (-) 1083 WP_263512519.1 3-dehydroquinate synthase -
  LSO60_RS15030 (LSO60_15010) aroK 3167414..3167956 (-) 543 WP_263512520.1 shikimate kinase AroK -
  LSO60_RS15035 (LSO60_15015) pilQ 3167993..3170122 (-) 2130 WP_263513413.1 type IV pilus secretin PilQ Machinery gene
  LSO60_RS15040 (LSO60_15020) pilP 3170185..3170709 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO60_RS15045 (LSO60_15025) pilO 3170709..3171422 (-) 714 WP_263512521.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO60_RS15050 (LSO60_15030) pilN 3171419..3172057 (-) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  LSO60_RS15055 (LSO60_15035) pilM 3172057..3173115 (-) 1059 WP_262476554.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19069.24 Da        Isoelectric Point: 8.2498

>NTDB_id=634833 LSO60_RS15040 WP_004991753.1 3170185..3170709(-) (pilP) [Acinetobacter ursingii strain RIVM_C010559]
MKKHSIFMAIVCCGLVGCDSRIDAVNEQMAAIRNQPPLPIEPAPVFTPVPSFTYSAMQLKSPFLPSSLAAELKIMAGKRV
YPNFNRQPQPLESYALESLNMKGSMRSQNGKILALIQTPDGQVERVQVGSYMGMNQGRIVGISPTQIDLVEIVPDGRDGY
VERPRTLVLIGPEP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=634833 LSO60_RS15040 WP_004991753.1 3170185..3170709(-) (pilP) [Acinetobacter ursingii strain RIVM_C010559]
ATGAAAAAACATAGTATTTTCATGGCAATCGTATGTTGTGGTTTGGTTGGTTGTGATTCACGTATTGATGCTGTAAATGA
ACAAATGGCAGCCATTCGTAATCAGCCACCTTTGCCGATTGAACCTGCACCTGTTTTTACGCCTGTGCCGAGTTTTACCT
ATTCAGCCATGCAGTTGAAAAGCCCATTTTTACCTAGCTCTTTGGCAGCTGAACTCAAAATTATGGCAGGTAAACGGGTT
TATCCGAACTTTAATCGTCAGCCGCAACCACTTGAAAGCTACGCACTCGAATCTTTAAATATGAAAGGCAGTATGCGTAG
CCAAAATGGAAAGATTCTTGCATTAATTCAGACGCCTGATGGACAAGTTGAGCGGGTTCAGGTTGGAAGCTATATGGGAA
TGAATCAAGGGAGAATTGTCGGAATCAGTCCGACACAAATTGATTTGGTTGAAATTGTACCAGATGGTCGAGATGGTTAT
GTTGAGCGTCCGCGTACCTTGGTTCTGATTGGGCCTGAGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

80.571

100

0.81
  comL Acinetobacter baylyi ADP1

72.414

100

0.724