Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LSO60_RS15050 Genome accession   NZ_CP089051
Coordinates   3171419..3172057 (-) Length   212 a.a.
NCBI ID   WP_104794744.1    Uniprot ID   A0AA46NPU0
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3166419..3177057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS15030 (LSO60_15010) aroK 3167414..3167956 (-) 543 WP_263512520.1 shikimate kinase AroK -
  LSO60_RS15035 (LSO60_15015) pilQ 3167993..3170122 (-) 2130 WP_263513413.1 type IV pilus secretin PilQ Machinery gene
  LSO60_RS15040 (LSO60_15020) pilP 3170185..3170709 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO60_RS15045 (LSO60_15025) pilO 3170709..3171422 (-) 714 WP_263512521.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO60_RS15050 (LSO60_15030) pilN 3171419..3172057 (-) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  LSO60_RS15055 (LSO60_15035) pilM 3172057..3173115 (-) 1059 WP_262476554.1 pilus assembly protein PilM Machinery gene
  LSO60_RS15060 (LSO60_15040) ponA 3173279..3175852 (+) 2574 WP_263512522.1 penicillin-binding protein PBP1a -
  LSO60_RS15065 (LSO60_15045) - 3175901..3176704 (-) 804 WP_263512523.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23748.76 Da        Isoelectric Point: 4.9391

>NTDB_id=634835 LSO60_RS15050 WP_104794744.1 3171419..3172057(-) (pilN) [Acinetobacter ursingii strain RIVM_C010559]
MAKINLLPWRDELREQRKKQFIAFSAAVAVLGVVAVVLAWLFYDHKLNDQEQANQLIVSTNQNLDTQLKSLDGLQERRNA
IVERMKLIQGLEGQRPVTVRLIDELVRVTPSNMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
ADDKKDQNQSSVVPRVEESYGTFVVTTDLGEIGASVTEDNNDQSGSNTGAAQ

Nucleotide


Download         Length: 639 bp        

>NTDB_id=634835 LSO60_RS15050 WP_104794744.1 3171419..3172057(-) (pilN) [Acinetobacter ursingii strain RIVM_C010559]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAGCAGCGCAAGAAACAATTTATTGCATTTAGTGCTGC
CGTTGCAGTACTTGGGGTAGTAGCTGTGGTCTTGGCTTGGTTGTTTTATGATCATAAGCTTAACGATCAGGAACAAGCCA
ATCAATTGATTGTCAGTACCAACCAGAATCTGGATACGCAGTTGAAATCACTTGATGGTCTGCAAGAGCGCCGCAATGCG
ATTGTAGAGCGTATGAAGCTGATTCAAGGTTTGGAAGGTCAACGTCCAGTAACCGTTCGCTTGATTGATGAATTGGTGCG
GGTGACACCAAGTAATATGTATCTGACCAAATTCAGTCGTACAGGCGATAAATTTACCATTGAAGGCAAAGCGGAAAGTC
CAAATACTGTTGCAGAGTTATTGCGTAACTTAGAGGCTTCACCGTGGTATCGTAATGCCTTTATGAACTCCTTCTTGGCA
GCAGATGATAAAAAAGATCAAAATCAAAGCTCTGTGGTGCCGCGCGTTGAAGAAAGCTATGGCACTTTCGTTGTGACCAC
AGATTTGGGTGAAATTGGGGCATCAGTTACAGAAGATAATAACGATCAATCAGGTTCAAATACGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

73.709

100

0.741
  comN Acinetobacter baylyi ADP1

74.163

98.585

0.731