Detailed information NTG0634030

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LRK55_RS03730
• Genome accession: NZ_CP088925
• Coordinates: 788992..789849 (+)
• Length: 285 a.a.
• NCBI ID: WP_027490753.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW104-MT042
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 783992..794849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK55_RS03705 (LRK55_03705)	-	784024..784419 (-)	396	WP_007513922.1	type II toxin-antitoxin system VapC family toxin	-
LRK55_RS03710 (LRK55_03710)	-	784416..784658 (-)	243	WP_007513924.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
LRK55_RS03715 (LRK55_03715)	pilB	785292..787016 (+)	1725	WP_007513926.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LRK55_RS03720 (LRK55_03720)	pilC	787159..788430 (+)	1272	WP_008438585.1	type II secretion system F family protein	Machinery gene
LRK55_RS03725 (LRK55_03725)	-	788579..788977 (+)	399	WP_008438584.1	endonuclease domain-containing protein	-
LRK55_RS03730 (LRK55_03730)	pilD	788992..789849 (+)	858	WP_027490753.1	A24 family peptidase	Machinery gene
LRK55_RS03735 (LRK55_03735)	coaE	789846..790466 (+)	621	WP_027485880.1	dephospho-CoA kinase	-
LRK55_RS03740 (LRK55_03740)	-	790603..791019 (-)	417	WP_027490755.1	NUDIX domain-containing protein	-
LRK55_RS03745 (LRK55_03745)	-	791019..791507 (-)	489	WP_015447031.1	dihydrofolate reductase	-
LRK55_RS03750 (LRK55_03750)	-	791634..792428 (-)	795	WP_027490756.1	thymidylate synthase	-
LRK55_RS03755 (LRK55_03755)	-	792521..793534 (+)	1014	WP_027490757.1	TIGR00266 family protein	-
LRK55_RS03760 (LRK55_03760)	lgt	793625..794443 (-)	819	WP_027490758.1	prolipoprotein diacylglyceryl transferase	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 30868.10 Da
• Isoelectric Point: 8.1460

>NTDB_id=634030 LRK55_RS03730 WP_027490753.1 788992..789849(+) (pilD) [Rhodanobacter denitrificans strain FW104-MT042]
MPELPLALWIALAGVLGLLVGSFLNVVILRLPARMAAAWRQEAWDVLELQADAVPLPPGIVREPSHCPHCKHPLSALDNI
PLLGWLLLRGRCRYCRAEISIQYPLVELLSGVLSAVIVWKFGPSWAALAGLALTWTLIALSGIDFRTQLLPDQLTLPLLW
LGLLLSLLPMFVTAPASILAAAIGYLSLWSVYWAFKLLTGKEGMGHGDFKLLAALGAWMGPVALLPVILLSSLIGALVGG
TLIALRKHEREIPMPFGPFIAAAGWVWFVAGADLLQGYMQLTGLR

Nucleotide

• Length: 858 bp

>NTDB_id=634030 LRK55_RS03730 WP_027490753.1 788992..789849(+) (pilD) [Rhodanobacter denitrificans strain FW104-MT042]
ATGCCCGAACTTCCCCTTGCCCTGTGGATCGCCCTGGCCGGTGTGCTCGGCCTGCTGGTGGGCAGCTTTCTCAACGTGGT
GATCCTGCGCCTGCCAGCGCGCATGGCGGCAGCGTGGCGGCAGGAGGCGTGGGATGTGCTGGAGCTCCAGGCTGACGCCG
TGCCGCTGCCGCCGGGTATCGTGCGCGAGCCGTCGCATTGCCCGCACTGCAAGCACCCGTTGTCAGCGCTGGACAACATT
CCGCTGCTTGGCTGGCTGCTGCTGCGCGGGCGCTGCCGCTACTGCCGGGCGGAGATTTCGATCCAGTACCCGTTGGTGGA
ACTGCTCAGCGGCGTGCTGAGCGCGGTGATCGTGTGGAAATTCGGGCCGTCATGGGCGGCGCTGGCGGGGCTGGCGCTGA
CCTGGACGCTGATCGCGCTGTCCGGCATCGACTTCCGCACCCAGTTGTTGCCCGACCAGCTCACCCTGCCGCTGCTGTGG
CTGGGCCTGCTGCTGTCGCTGCTGCCGATGTTCGTCACCGCGCCGGCGTCGATCCTGGCCGCCGCGATCGGCTACCTCAG
CCTGTGGAGCGTGTACTGGGCGTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGCCATGGCGATTTCAAGCTGCTCGCCG
CGCTGGGCGCATGGATGGGGCCGGTGGCGCTGCTGCCGGTCATCCTGCTGTCGTCGCTGATCGGCGCGCTGGTCGGCGGC
ACCCTGATCGCGCTGCGCAAGCATGAGCGCGAGATTCCGATGCCGTTCGGCCCGTTCATCGCCGCCGCCGGCTGGGTCTG
GTTCGTGGCCGGCGCGGACCTGCTGCAGGGTTACATGCAACTGACCGGCCTGCGGTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (132-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.735	95.439	0.484
pilD	Acinetobacter nosocomialis M2	49.27	96.14	0.474
pilD	Acinetobacter baumannii D1279779	48.905	96.14	0.47
pilD	Vibrio campbellii strain DS40M4	48.175	96.14	0.463
pilD	Neisseria gonorrhoeae MS11	48.669	92.281	0.449