Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA4_RS28975 Genome accession   NZ_CP104866
Coordinates   6241835..6242359 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6236835..6247359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS28960 (PALA4_05721) aroB 6237951..6239057 (-) 1107 WP_043091242.1 3-dehydroquinate synthase -
  PALA4_RS28965 (PALA4_05722) aroK 6239107..6239625 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA4_RS28970 (PALA4_05723) pilQ 6239637..6241781 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  PALA4_RS28975 (PALA4_05724) comL/pilP 6241835..6242359 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA4_RS28980 (PALA4_05725) pilO 6242356..6242979 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA4_RS28985 (PALA4_05726) pilN 6242976..6243572 (-) 597 WP_043091243.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA4_RS28990 (PALA4_05727) pilM 6243572..6244636 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA4_RS28995 (PALA4_05728) - 6244821..6247292 (+) 2472 WP_003110889.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=634031 PALA4_RS28975 WP_003095836.1 6241835..6242359(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA4]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=634031 PALA4_RS28975 WP_003095836.1 6241835..6242359(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA4]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362