Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LRX85_RS01310 Genome accession   NZ_CP088894
Coordinates   272703..274868 (+) Length   721 a.a.
NCBI ID   WP_001017034.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1935     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 267703..279868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX85_RS01290 (LRX85_01290) pilM 269666..270724 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LRX85_RS01295 (LRX85_01295) pilN 270724..271365 (+) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  LRX85_RS01300 (LRX85_01300) pilO 271362..272102 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRX85_RS01305 (LRX85_01305) pilP 272113..272640 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LRX85_RS01310 (LRX85_01310) pilQ 272703..274868 (+) 2166 WP_001017034.1 type IV pilus secretin PilQ Machinery gene
  LRX85_RS01315 (LRX85_01315) aroK 274880..275449 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LRX85_RS01320 (LRX85_01320) aroB 275478..276560 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LRX85_RS01325 (LRX85_01325) - 276576..277451 (+) 876 WP_000218803.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77901.31 Da        Isoelectric Point: 6.9045

>NTDB_id=633742 LRX85_RS01310 WP_001017034.1 272703..274868(+) (pilQ) [Acinetobacter baumannii strain XH1935]
MNHVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGVGVITIQSSGSYEYMAYQAENKLTI
SLKRPRDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINIVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=633742 LRX85_RS01310 WP_001017034.1 272703..274868(+) (pilQ) [Acinetobacter baumannii strain XH1935]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAACATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATACTTGATTTTGATAAGGCTCAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCAAGTTCTGTAGATGTTACTTCAGATGACCAGCGTTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTCGAAGGTAATACCTTTATTTTAAAGATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCTCAACCACAAGGTGTTTCAAATATTGGCTTTCAACGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCACGTCGCTTAAATGTAAATGATTTTGCAACCCCCGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGTTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTATCAGGCAGAGAATAAGCTCACGATC
AGTTTGAAACGTCCCCGAGATAAAAATGTTACCTCTTTATATAAAACGCCGAATTATTCAGGAAATAAACTTTCATTAGA
CTTCCAAGATATTGAAGTACGTCGTGTGTTGCAATTACTTGCTGATTTTACAGGCATCAATATAGTAGCTGCCGATAGTG
TACAAGGTAATATCACACTACGTTTAAAAGATGTACCTTGGGATCAGGCTCTTGATATTATTTTAAAAACTAAAAATCTT
GATAAACGCCGTAACGGCAATGTGATTTGGATTGCTCCAGTTGCAGAATTGATTAAGGCGGAAGAAGAAGAAGCGAAAGC
TGTTGCACAAAGTGTCAAACTTGCACCCTTACAGACTGAGTATATTCAACTGAAGTATGCTAAAGCTGGCGATATTATGG
GTCTCATTACACAAGGCTCAAATAATAGTAATGGTTTACAGCATACTTCTGGTGGAGGGACTTCAACTTCAACCAATTTA
AATACTGGAGTTGATAGTCTAGGCAATAATGTGGGTAGTTTGCTTAGCCCACGTGGCACTATTACCCAAGATGACCGAAC
TAATACTCTTATTATTAATGATACTGCTCAGTCAATTGATCAAATTCGTAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAAGTTATGGTTGAAGCACGTATTGTGAGAGCCTCTACGTCATTTACCAAAGAACTTGGTGTGAAGTGGGGTATTCTG
TCGCAAGGTATTACCAATAACAACAATTTGCTGGTTGGCGGTAGTGAAACAACTTTATGGAATTTACGCGAACCTAAAAA
AGATGAAACTACAGGTGGGTATAAATATACGATTGAGCGCCCAGATAACTTAAACGTGGATTTAGGAGTTTCTAATCCTG
CAGGAAGTATTGCTTTTGGCTTGATTAGTATGTCTGACTTTATGTTAGATCTTGAATTGTCTGCTTTACAAGCGGATGGT
TATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCTGATAAACAAACAGCGAAAGTTGCAACTGGTCAACAAGTTCC
ATATCAATCTACAACTAACTCTGCAGCAGGTTCAACTGCTACAACATCTTTTAAAGATGCTTTGCTGAGTTTAAATGTGA
CACCAAGTATTACACCTGATGGCAAGATTCAAATGAAATTGGATATTTCTAAGGATTCTGTAGCGGGTGCGGCTCCAAAT
GGAGAGTTGATTTTAAATAAAAATAATATCAACACCAATGTATTGGTAGATAATGGCGAAACTGTCATTTTGGGTGGTGT
TTTTGAGCAAACAACTATGAATTCACAAACCAAAGTTCCTTTCTTTGGTGATATTCCTGTTGTTGGGCGTTTATTTAGAA
AAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTTTCGTTACACCACGAATTGTTAATGACACTTTAGCGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(39-121)

Secretin and TonB N terminus short domain (STN)

(287-333)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

99.723

100

0.997
  pilQ Acinetobacter baumannii strain A118

99.584

100

0.996
  comQ Acinetobacter baylyi ADP1

75.104

100

0.753
  pilQ Pseudomonas aeruginosa PAK

40.42

99.168

0.401