Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LRX85_RS01295 Genome accession   NZ_CP088894
Coordinates   270724..271365 (+) Length   213 a.a.
NCBI ID   WP_000201228.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1935     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 265724..276365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX85_RS01275 (LRX85_01275) - 265772..266104 (+) 333 WP_000169602.1 hypothetical protein -
  LRX85_RS01280 (LRX85_01280) - 266107..266931 (+) 825 WP_096877324.1 putative RNA methyltransferase -
  LRX85_RS01285 (LRX85_01285) ponA 266949..269504 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LRX85_RS01290 (LRX85_01290) pilM 269666..270724 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LRX85_RS01295 (LRX85_01295) pilN 270724..271365 (+) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  LRX85_RS01300 (LRX85_01300) pilO 271362..272102 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRX85_RS01305 (LRX85_01305) pilP 272113..272640 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LRX85_RS01310 (LRX85_01310) pilQ 272703..274868 (+) 2166 WP_001017034.1 type IV pilus secretin PilQ Machinery gene
  LRX85_RS01315 (LRX85_01315) aroK 274880..275449 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24005.32 Da        Isoelectric Point: 5.3968

>NTDB_id=633739 LRX85_RS01295 WP_000201228.1 270724..271365(+) (pilN) [Acinetobacter baumannii strain XH1935]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=633739 LRX85_RS01295 WP_000201228.1 270724..271365(+) (pilN) [Acinetobacter baumannii strain XH1935]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709