Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KDJ21_RS07895 Genome accession   NZ_CP088268
Coordinates   1627925..1628362 (+) Length   145 a.a.
NCBI ID   WP_232273785.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622925..1633362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS07870 (KDJ21_007870) - 1623813..1624496 (+) 684 WP_098798413.1 response regulator -
  KDJ21_RS07875 (KDJ21_007875) - 1624664..1625506 (+) 843 WP_212135710.1 DegV family protein -
  KDJ21_RS07880 (KDJ21_007880) - 1625635..1625838 (+) 204 WP_121663642.1 Myb-like DNA-binding domain-containing protein -
  KDJ21_RS07885 (KDJ21_007885) - 1625835..1627325 (+) 1491 WP_212135711.1 DEAD/DEAH box helicase -
  KDJ21_RS07890 (KDJ21_007890) - 1627395..1627670 (+) 276 WP_212135713.1 late competence development ComFB family protein -
  KDJ21_RS07895 (KDJ21_007895) comFC 1627925..1628362 (+) 438 WP_232273785.1 ComF family protein Machinery gene
  KDJ21_RS07900 (KDJ21_007900) - 1628422..1628847 (+) 426 WP_098798419.1 TIGR03826 family flagellar region protein -
  KDJ21_RS07905 (KDJ21_007905) flgM 1628929..1629192 (+) 264 WP_212135715.1 flagellar biosynthesis anti-sigma factor FlgM -
  KDJ21_RS07910 (KDJ21_007910) - 1629276..1630298 (+) 1023 WP_232273786.1 hypothetical protein -
  KDJ21_RS07915 (KDJ21_007915) - 1630295..1631668 (+) 1374 WP_232273787.1 hypothetical protein -
  KDJ21_RS07920 (KDJ21_007920) - 1631668..1631964 (+) 297 WP_098798444.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  KDJ21_RS07925 (KDJ21_007925) fliS 1632007..1632462 (+) 456 WP_098798422.1 flagellar export chaperone FliS -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16428.09 Da        Isoelectric Point: 10.1260

>NTDB_id=633624 KDJ21_RS07895 WP_232273785.1 1627925..1628362(+) (comFC) [Metabacillus litoralis strain NCTR108]
MKELLATFKFRGDAALVEVFHNDFLACYKTNLVKEKIDFTIPIPLSPERLYERGFNQAKLLATFLPLAQIDILTRTHHEK
QSKKSRQERLTASNMFSVEDSSKIMNKKILLIDDIYTTGSTLRHAAKVLKDNGAASVSSLTLIRS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=633624 KDJ21_RS07895 WP_232273785.1 1627925..1628362(+) (comFC) [Metabacillus litoralis strain NCTR108]
ATGAAAGAGTTGCTCGCTACGTTTAAGTTTCGTGGTGATGCTGCGTTGGTGGAGGTTTTTCATAATGACTTTTTAGCATG
CTACAAAACAAATCTTGTTAAAGAGAAAATAGATTTTACGATTCCCATTCCCCTAAGCCCAGAGCGGTTATATGAACGAG
GTTTTAACCAAGCAAAGCTGCTCGCAACCTTTCTCCCACTAGCTCAAATCGATATCCTCACGCGAACCCACCATGAAAAA
CAATCAAAAAAATCACGACAGGAACGATTAACAGCTTCAAACATGTTTTCTGTAGAAGATTCTAGTAAAATAATGAACAA
GAAGATTCTTTTAATAGATGATATTTATACCACTGGTAGTACGTTGAGACATGCTGCTAAGGTGTTGAAAGACAATGGAG
CAGCTTCCGTTTCCTCTTTAACATTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(73-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50.34

100

0.51
  comFC Lactococcus lactis subsp. cremoris KW2

41.667

99.31

0.414
  comFC/cflB Streptococcus mitis NCTC 12261

41.667

99.31

0.414
  comFC/cflB Streptococcus mitis SK321

40.278

99.31

0.4
  comFC/cflB Streptococcus pneumoniae Rx1

39.583

99.31

0.393
  comFC/cflB Streptococcus pneumoniae D39

39.583

99.31

0.393
  comFC/cflB Streptococcus pneumoniae R6

39.583

99.31

0.393
  comFC/cflB Streptococcus pneumoniae TIGR4

39.583

99.31

0.393