Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LQF05_RS17990 Genome accession   NZ_CP088004
Coordinates   3853142..3855262 (-) Length   706 a.a.
NCBI ID   WP_270066919.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3848142..3860262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF05_RS17975 (LQF05_17960) - 3849896..3851455 (-) 1560 WP_270066917.1 AAA family ATPase -
  LQF05_RS17980 (LQF05_17965) aroB 3851466..3852569 (-) 1104 WP_270066918.1 3-dehydroquinate synthase -
  LQF05_RS17985 (LQF05_17970) aroK 3852593..3853138 (-) 546 WP_017244294.1 shikimate kinase AroK -
  LQF05_RS17990 (LQF05_17975) pilQ 3853142..3855262 (-) 2121 WP_270066919.1 type IV pilus secretin PilQ Machinery gene
  LQF05_RS17995 (LQF05_17980) pilP 3855316..3855843 (-) 528 WP_192475537.1 type 4a pilus biogenesis lipoprotein PilP -
  LQF05_RS18000 (LQF05_17985) pilO 3855840..3856466 (-) 627 WP_045632889.1 type 4a pilus biogenesis protein PilO -
  LQF05_RS18005 (LQF05_17990) pilN 3856463..3857035 (-) 573 WP_270066920.1 type 4a pilus biogenesis protein PilN -
  LQF05_RS18010 (LQF05_17995) comM 3857035..3858099 (-) 1065 WP_045159370.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 75652.80 Da        Isoelectric Point: 4.7044

>NTDB_id=632308 LQF05_RS17990 WP_270066919.1 3853142..3855262(-) (pilQ) [Stutzerimonas stutzeri strain SB-1]
MNTTLSRLGVSLLAAFISPALLAANLNALDVAALPGDRVELKLAFDEPVASPRGYTLDQPARIALDLPGVSNNLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLTALVPYSTRVDGNNLFVVLGESSGTTSSAAASAAVTAPIAKPAPVKPMAAGKAIDN
IDFRRGEDGAGNVVITLSDPSVGSTIEEQGGKIRVVFAKAELPEALRVRLDVQDFATPVKFVDSTAQAGGASIAIEPTGR
YDYLAYQTDNKLTISVKPLTEEEADKRKTDRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTSNGAV
AEDRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVGYDKALGVRWGGNYTNDNWGLYGKDGA
IGRDEDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQLSAMEKTGNGEVVSQPKVVTAD
KETAKILKGAEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLV
TDGETIVIGGVFSNSQISSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRILNYRAVAVGQ

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=632308 LQF05_RS17990 WP_270066919.1 3853142..3855262(-) (pilQ) [Stutzerimonas stutzeri strain SB-1]
ATGAATACTACCCTTTCTCGCCTGGGCGTATCTCTGCTGGCGGCATTTATTTCGCCAGCACTGCTGGCGGCCAATCTCAA
CGCCTTGGATGTGGCTGCTTTGCCGGGCGATCGGGTTGAGTTGAAACTGGCATTTGACGAGCCTGTCGCGTCACCTCGTG
GCTACACGCTGGATCAGCCTGCACGTATTGCCCTGGATCTTCCAGGCGTATCCAACAATCTGGGGGCCAAAAATCGGGAG
CTGGGCGTTGGTAATGCGCGCAGCGTAACGGTCGTCGAGGCTCAAGGGCGCACCCGGCTCATCGTCAATCTGACCGCGCT
TGTTCCGTATTCCACTCGAGTGGATGGGAACAATCTGTTTGTCGTGCTGGGAGAGAGCTCGGGGACGACCAGCTCTGCTG
CTGCATCCGCCGCGGTCACTGCTCCGATTGCCAAGCCTGCTCCGGTAAAGCCGATGGCGGCCGGCAAGGCGATCGACAAT
ATCGATTTTCGCCGCGGTGAAGATGGTGCCGGAAACGTCGTAATCACACTGTCCGATCCGTCGGTAGGTTCGACTATCGA
AGAGCAGGGAGGAAAAATCCGCGTTGTGTTCGCCAAGGCGGAGCTGCCTGAAGCACTACGTGTTCGGCTTGACGTTCAGG
ATTTCGCTACGCCGGTGAAGTTTGTCGACTCGACCGCTCAGGCAGGCGGCGCCAGTATCGCCATCGAGCCTACTGGGCGA
TACGATTATCTCGCCTACCAGACAGACAACAAGCTGACCATCAGCGTAAAGCCCCTTACAGAAGAAGAGGCCGATAAGCG
CAAGACAGACCGTTTTGCCTATTCCGGTGAAAAACTGTCGCTGAACTTCCAGGATATTGATGTTCGTTCCGTACTCCAGT
TGATCGCTGATTTTACTGACCTGAACTTGGTTGCCAGCGATACCGTCAGTGGCAACATCACTCTTCGTTTGCAAAATGTG
CCTTGGGATCAAGCGCTCGACCTGGTTTTGAAAACCAAGGGGCTGGATAAACGGCAAGTCGGGAACGTGCTGCTCGTTGC
ACCTGCTGACGAAATCGCTGCACGTGAACGCCAAGAGCTTGAGTCGCAGCGCCAGATAGCCGAGCTTGCACCGTTGCGTC
GCGAGGTCGTGCAAGTCAACTATGCCAAGGCTGCGGACATTGCTCGCCTGTTCCAGTCAGTGACGAGCAACGGCGCCGTT
GCAGAGGATCGTGGCTCTATAGCGGTGGATGATCGCACCAATAACATCATCGCTTATCAAACGCAGGAGCGACTTGACGA
GCTGCGTCGCATCGTCGCTCAGCTCGACATTCCTGTGCGGCAGGTGATGATCGAGGCGCGCATTGTTGAGGCGAATGTGG
GCTACGACAAAGCGCTTGGGGTTCGTTGGGGGGGGAACTACACCAACGACAATTGGGGCTTGTATGGTAAGGACGGTGCC
ATCGGTCGTGATGAAGATGGCGGTCGATATCTTCTCCCAGGTACAGACAAAGTCGGCAATTTTACCCTTGAAGATGCGTT
GGCCCCGGTTCCATTTGTCGATCTAGGAGTGCTTAACAGCACCGCCGGTATTGGGATTGGCTATGTCTCGGATCATGGAA
TCCTGGATCTTCAATTGTCGGCCATGGAGAAGACCGGTAACGGTGAAGTCGTCTCCCAACCAAAGGTGGTTACTGCGGAT
AAGGAAACGGCCAAGATCTTGAAAGGTGCGGAAATTCCCTACCAAGAAGCCAGTTCGAGTGGCGCAACGTCGACTTCCTT
CAAGGAGGCAGCTCTTTCGCTTGAGGTGACGCCGCAGATCACGCCGGACAACCGCATTATCATGGAGGTCAAGGTCACCA
AGGATGCCCCTGATTTTGCTAACGCTCTGAATGGCGTGCCGCCGATCAACAAGAACGAAGTCAACGCCAAAGTTCTTGTT
ACCGATGGAGAAACAATCGTCATCGGTGGTGTATTCTCCAACAGCCAGATCAGCAGCATTGAAAAAGTGCCGTTCCTGGG
TGACGTTCCGTTCGTTGGTCGCCTCTTCCGACGGGACATCGTGGAAGATAAAAAATCCGAGCTTCTGGTCTTCTTGACCC
CTAGAATCCTCAACTACCGAGCGGTCGCCGTGGGCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II and III secretion system protein (Secretin)

(541-697)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

AMIN domain (AMIN)

(38-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.27

100

0.756
  pilQ Acinetobacter baumannii strain A118

41.234

100

0.416
  pilQ Acinetobacter baumannii D1279779

41.234

100

0.416
  comQ Acinetobacter baylyi ADP1

41.954

98.584

0.414
  pilQ Legionella pneumophila strain ERS1305867

37.5

96.317

0.361