Detailed information NTG0632309

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LQF05_RS18010
• Genome accession: NZ_CP088004
• Coordinates: 3857035..3858099 (-)
• Length: 354 a.a.
• NCBI ID: WP_045159370.1
• Uniprot ID: A0AA42PD57
• Organism: Stutzerimonas stutzeri strain SB-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3852035..3863099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQF05_RS17985 (LQF05_17970)	aroK	3852593..3853138 (-)	546	WP_017244294.1	shikimate kinase AroK	-
LQF05_RS17990 (LQF05_17975)	pilQ	3853142..3855262 (-)	2121	WP_270066919.1	type IV pilus secretin PilQ	Machinery gene
LQF05_RS17995 (LQF05_17980)	pilP	3855316..3855843 (-)	528	WP_192475537.1	type 4a pilus biogenesis lipoprotein PilP	-
LQF05_RS18000 (LQF05_17985)	pilO	3855840..3856466 (-)	627	WP_045632889.1	type 4a pilus biogenesis protein PilO	-
LQF05_RS18005 (LQF05_17990)	pilN	3856463..3857035 (-)	573	WP_270066920.1	type 4a pilus biogenesis protein PilN	-
LQF05_RS18010 (LQF05_17995)	comM	3857035..3858099 (-)	1065	WP_045159370.1	pilus assembly protein PilM	Machinery gene
LQF05_RS18015 (LQF05_18000)	-	3858279..3860702 (+)	2424	WP_270066921.1	penicillin-binding protein 1A	-
LQF05_RS18020 (LQF05_18005)	-	3860768..3862036 (-)	1269	WP_011911783.1	malic enzyme-like NAD(P)-binding protein	-
LQF05_RS18025 (LQF05_18010)	-	3862178..3862972 (-)	795	WP_270066922.1	thermonuclease family protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37730.25 Da
• Isoelectric Point: 4.6880

>NTDB_id=632309 LQF05_RS18010 WP_045159370.1 3857035..3858099(-) (comM) [Stutzerimonas stutzeri strain SB-1]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKMIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLASQLGTGHGELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHMIQQKIGTQTLVANP
FADMALSGKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=632309 LQF05_RS18010 WP_045159370.1 3857035..3858099(-) (comM) [Stutzerimonas stutzeri strain SB-1]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTCCTCGAATT
AAGTCGATCGGGTAATCGGTACCGCGTCGAGGCTTATGCCGTCGAGCCGCTGCCACCGAATGCCGTCGTCGAAAAGAACA
TCGCCGAACTTGAGGGTGTCGGTCAGGCCCTGCAGCGAGTCGTTGCCAAGGCCAAGACCGGCTGCAAGTCCGCTGTTGTC
GCTGTCTCCGGGTCTGCCGTCATCACAAAGATGATTGAGATGGATGCCGGGCTTTCTGATGAAGAGCTCGAGAACCAGCT
CAAGATCGAGGCAGATCAGTACATCCCCTACCCACTGGAGGAAGTCGCGATCGACTTCGAGGTGCAAGGTCCTGCGCCTC
GCGCGCCTGGCAGGGTAGAAGTTCTCCTCGCCGCTTGCCGTAAAGAGAATGTCGAGATCCGTGAAGCCGCTCTGGCCTTG
GCCGGGCTTACCGCCAAAGTGGTGGATGTCGAGGCCTATGCGCTTGAGCGCTCCTACGGATTGCTCGCTTCACAATTGGG
TACAGGGCACGGCGAGCTGACCGTTGCCGTCGTCGACATCGGCGCGACCATGACAACCCTGAGCGTGCTGCATAACGGGC
GTACCATCTACACGCGCGAGCAGCTGTTCGGTGGTCGCCAACTGACCGAAGAGATCCAGCGCCGCTACGGTCTGTCTCAG
GAAGAAGCCGGCCTTGCCAAGAAGCAAGGTGGTCTTCCAGATGACTACGACAGTGAGGTCCTGCTTCCGTTCAAGGAGGC
AGTTGTGCAGCAGGTATCTCGCTCATTGCAGTTCTTCTTCGCTGCAGGGCAGTTCCACGACGTCGACTGCATTCTGCTCG
CGGGCGGGACGGCCTCCATTCCAGGTCTCGATCACATGATTCAGCAAAAGATCGGAACGCAAACTCTAGTGGCCAATCCT
TTCGCCGATATGGCTTTGAGCGGCAAGGTGAACGCCGGGGCGCTGGCCAGCGATGCGCCTGCATTAATGATTGCATGCGG
TTTGGCGCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	55.932	100	0.559
pilM	Acinetobacter baumannii D1279779	55.932	100	0.559
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	46.328	100	0.463