Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPW11_RS08760 Genome accession   NZ_CP087999
Coordinates   2048164..2048607 (-) Length   147 a.a.
NCBI ID   WP_230997742.1    Uniprot ID   -
Organism   Geomonas sp. RF6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2043164..2053607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPW11_RS08745 (LPW11_08745) - 2043230..2044321 (-) 1092 WP_230997739.1 nuclease-related domain-containing protein -
  LPW11_RS08750 (LPW11_08750) - 2044808..2045773 (+) 966 WP_230997740.1 transposase -
  LPW11_RS08755 (LPW11_08755) - 2046218..2047807 (-) 1590 WP_230997741.1 TIR domain-containing protein -
  LPW11_RS08760 (LPW11_08760) ssb 2048164..2048607 (-) 444 WP_230997742.1 single-stranded DNA-binding protein Machinery gene
  LPW11_RS08765 (LPW11_08765) - 2048804..2049670 (-) 867 WP_230997743.1 glutaminyl-peptide cyclotransferase -
  LPW11_RS08770 (LPW11_08770) - 2050129..2050824 (+) 696 WP_230997744.1 lysophospholipid acyltransferase family protein -
  LPW11_RS08775 (LPW11_08775) - 2050825..2051007 (+) 183 WP_230997745.1 hypothetical protein -
  LPW11_RS08780 (LPW11_08780) - 2051075..2051470 (+) 396 WP_230997746.1 soluble NSF attachment family protein -
  LPW11_RS08785 (LPW11_08785) - 2051598..2053274 (+) 1677 WP_230997747.1 ribonuclease J -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16341.17 Da        Isoelectric Point: 5.9579

>NTDB_id=632221 LPW11_RS08760 WP_230997742.1 2048164..2048607(-) (ssb) [Geomonas sp. RF6]
MASLNKVMLIGNLGKDPELRYTASGTAVASFSLATSDRIKNKNGEWEEKTEWHNVTLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWQDKDGKDRYTTEIVGEKMQMLSGKGEGGGQRQQSRPSQGGGYGQGSTYDEPVFNADDEIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=632221 LPW11_RS08760 WP_230997742.1 2048164..2048607(-) (ssb) [Geomonas sp. RF6]
ATGGCCAGTCTTAACAAGGTGATGCTGATCGGAAACCTCGGAAAGGATCCGGAGCTGCGCTATACCGCATCGGGTACCGC
AGTTGCTTCCTTCTCGCTGGCGACCTCGGACCGTATCAAGAACAAGAACGGCGAGTGGGAAGAGAAGACTGAATGGCACA
ACGTCACCCTGTGGGCGCGGCTTGCGGAGATCGCAGGCGAGTACCTGAGCAAGGGAAAGACCGTGTACATCGAAGGGCGC
CTGCAGACCAGGAAATGGCAGGACAAGGACGGCAAGGATCGTTACACCACCGAGATCGTCGGCGAGAAGATGCAGATGCT
TTCCGGCAAAGGCGAAGGCGGCGGCCAGCGCCAGCAGTCCCGCCCTTCCCAGGGCGGCGGCTACGGCCAGGGGAGCACCT
ACGACGAGCCGGTCTTCAACGCGGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.599
  ssb Neisseria meningitidis MC58

44.509

100

0.524
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.524
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.524
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.526

100

0.395
  ssb Latilactobacillus sakei subsp. sakei 23K

32.164

100

0.374