Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOC50_RS00065 Genome accession   NZ_CP087995
Coordinates   6810..7154 (+) Length   114 a.a.
NCBI ID   WP_250653932.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. SCSIO 43095     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1810..12154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC50_RS00025 (LOC50_00025) nudE 2174..2745 (+) 572 Protein_4 ADP compounds hydrolase NudE -
  LOC50_RS00030 (LOC50_00030) cysQ 2738..3533 (+) 796 Protein_5 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LOC50_RS00050 (LOC50_00050) - 5070..5684 (+) 615 WP_024601286.1 trimeric intracellular cation channel family protein -
  LOC50_RS00055 (LOC50_00055) comM 5719..6576 (+) 858 WP_250653408.1 magnesium chelatase domain-containing protein Machinery gene
  LOC50_RS00060 - 6479..6827 (+) 349 Protein_8 ATP-binding protein -
  LOC50_RS00065 (LOC50_00060) comM 6810..7154 (+) 345 WP_250653932.1 ATP-binding protein Machinery gene
  LOC50_RS00070 (LOC50_00065) - 7224..7927 (-) 704 Protein_10 response regulator transcription factor -
  LOC50_RS00075 (LOC50_00070) - 8092..10582 (-) 2491 Protein_11 prolyl oligopeptidase family serine peptidase -
  LOC50_RS00080 (LOC50_00075) - 10666..11732 (+) 1067 Protein_12 hemolysin family protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12815.76 Da        Isoelectric Point: 10.0958

>NTDB_id=632173 LOC50_RS00065 WP_250653932.1 6810..7154(+) (comM) [Pseudoalteromonas sp. SCSIO 43095]
MRYLSRVSGPFIDRIDLQIELPRLSSVELQSTTAEETSAEVRARVEAAYAIQLKRQGKVNARLNNKEMSLYCELPAAELQ
FLARASEKLALSPRSYHRVIKVARTISDLKGAPN

Nucleotide


Download         Length: 345 bp        

>NTDB_id=632173 LOC50_RS00065 WP_250653932.1 6810..7154(+) (comM) [Pseudoalteromonas sp. SCSIO 43095]
ATGCGTTATTTATCGCGGGTATCGGGACCGTTTATCGATAGAATTGATTTGCAAATTGAGCTCCCTAGACTAAGCAGCGT
GGAGCTACAAAGTACGACTGCAGAAGAAACCAGTGCTGAAGTGAGAGCGCGAGTAGAAGCGGCTTATGCAATACAATTAA
AACGCCAAGGTAAAGTAAATGCGCGGCTAAATAACAAAGAAATGAGCTTATACTGCGAGTTACCCGCTGCGGAGCTACAG
TTTTTAGCTAGAGCAAGTGAAAAGCTGGCGTTATCGCCGCGCTCTTATCATAGAGTGATAAAAGTAGCGCGTACCATTAG
TGATTTAAAAGGCGCGCCAAATTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(35-113)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.679

98.246

0.518
  comM Glaesserella parasuis strain SC1401

49.558

99.123

0.491
  comM Vibrio cholerae strain A1552

50

98.246

0.491
  comM Vibrio campbellii strain DS40M4

45.614

100

0.456
  comM Legionella pneumophila str. Paris

43.243

97.368

0.421
  comM Legionella pneumophila strain ERS1305867

43.243

97.368

0.421
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.708

99.123

0.404