Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOC50_RS00055 Genome accession   NZ_CP087995
Coordinates   5719..6576 (+) Length   285 a.a.
NCBI ID   WP_250653408.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. SCSIO 43095     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 719..11576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC50_RS00020 (LOC50_00020) yrfG 1239..1887 (-) 649 Protein_3 GMP/IMP nucleotidase -
  LOC50_RS00025 (LOC50_00025) nudE 2174..2745 (+) 572 Protein_4 ADP compounds hydrolase NudE -
  LOC50_RS00030 (LOC50_00030) cysQ 2738..3533 (+) 796 Protein_5 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LOC50_RS00050 (LOC50_00050) - 5070..5684 (+) 615 WP_024601286.1 trimeric intracellular cation channel family protein -
  LOC50_RS00055 (LOC50_00055) comM 5719..6576 (+) 858 WP_250653408.1 magnesium chelatase domain-containing protein Machinery gene
  LOC50_RS00060 - 6479..6827 (+) 349 Protein_8 ATP-binding protein -
  LOC50_RS00065 (LOC50_00060) comM 6810..7154 (+) 345 WP_250653932.1 ATP-binding protein Machinery gene
  LOC50_RS00070 (LOC50_00065) - 7224..7927 (-) 704 Protein_10 response regulator transcription factor -
  LOC50_RS00075 (LOC50_00070) - 8092..10582 (-) 2491 Protein_11 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 30530.21 Da        Isoelectric Point: 6.6284

>NTDB_id=632172 LOC50_RS00055 WP_250653408.1 5719..6576(+) (comM) [Pseudoalteromonas sp. SCSIO 43095]
MSLARIFSRAQVGINAPEVMVEVHLGNGLPAFHIVGLPEASVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEIRAVNAILPSVLGAKEQNRCCFLPLENDSLASLVSGVKRKAVSSI
QEVWGDLLNQQPLPLNITYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMSTIMPTMS
DDEAIDTAALYSIIGPLNRFNQLASATISKSSSHLLCRCAGRRFV

Nucleotide


Download         Length: 858 bp        

>NTDB_id=632172 LOC50_RS00055 WP_250653408.1 5719..6576(+) (comM) [Pseudoalteromonas sp. SCSIO 43095]
ATGTCATTAGCCCGTATATTTTCTCGCGCACAAGTAGGAATTAATGCCCCCGAGGTTATGGTTGAAGTGCATTTAGGGAA
TGGTTTACCTGCATTTCATATTGTCGGCTTACCCGAAGCATCGGTTAAAGAGGCCAAGGATAGAGTACGCAGCGCCCTTG
AAAACTCTCAATTTGGATTTCCCGATCAACGTATCACCGTTAATTTAGCACCTGCCGATTTACCAAAAGACGGCGGGCGG
TTTGACCTTGCGATTGCGGTAGGCATTTTGGTCGCATCGGGGCAAATAGTCTGCCCTGATATTCATAAGTATGAGTTTTA
TGGTGAGCTTGCACTTAATGGTGAAATACGTGCAGTAAATGCTATTTTACCCTCAGTGCTTGGAGCTAAAGAGCAAAACC
GTTGCTGTTTTCTTCCTCTTGAAAACGATAGTTTGGCCAGCCTTGTCAGCGGTGTAAAACGAAAAGCGGTAAGCTCTATA
CAAGAGGTGTGGGGAGACTTACTCAACCAACAACCTTTACCATTGAATATTACCTACCCTGACTGTACCCAAGCGCCAGA
CTTTTTACTCGATTTAAGTGATGTAAAAGGCCAACCCGGTGCTAAACGAGTACTAGAAATTGCTGCCGCAGGTGGACATA
ACCTACTATTTTTAGGACCACCAGGAACCGGTAAATCAATGCTTGCGCAACGAATGTCTACAATAATGCCAACCATGTCA
GATGATGAAGCCATTGATACTGCCGCTTTGTATTCCATTATTGGGCCACTCAATCGATTTAACCAATTGGCGTCAGCGAC
CATTTCGAAATCCTCATCACACTTGCTCTGCCGTTGCGCTGGTAGGCGGTTCGTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

88.772

0.498
  comM Vibrio campbellii strain DS40M4

54.941

88.772

0.488
  comM Haemophilus influenzae Rd KW20

52.326

90.526

0.474
  comM Glaesserella parasuis strain SC1401

51.172

89.825

0.46
  comM Legionella pneumophila str. Paris

48.473

91.93

0.446
  comM Legionella pneumophila strain ERS1305867

48.473

91.93

0.446
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

37.102

99.298

0.368