Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   LP088_RS13375 Genome accession   NZ_CP087814
Coordinates   2613666..2615375 (-) Length   569 a.a.
NCBI ID   WP_078274627.1    Uniprot ID   A0AAQ2Q8U8
Organism   Moraxella bovis strain SAM109238     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2608666..2620375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP088_RS13355 (LP088_13235) - 2609695..2610210 (-) 516 WP_078274623.1 hypothetical protein -
  LP088_RS13360 (LP088_13240) metN 2610794..2611840 (+) 1047 WP_078274624.1 methionine ABC transporter ATP-binding protein MetN -
  LP088_RS13365 (LP088_13245) - 2611830..2612519 (+) 690 WP_078274625.1 methionine ABC transporter permease -
  LP088_RS13370 (LP088_13250) - 2612699..2613568 (+) 870 WP_078274626.1 MetQ/NlpA family lipoprotein -
  LP088_RS13375 (LP088_13255) pilB 2613666..2615375 (-) 1710 WP_078274627.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LP088_RS13380 (LP088_13260) tpiA 2615676..2616425 (+) 750 WP_078274628.1 triose-phosphate isomerase -
  LP088_RS13385 (LP088_13265) secG 2616436..2616732 (+) 297 WP_078274629.1 preprotein translocase subunit SecG -
  LP088_RS13390 (LP088_13270) - 2616893..2617381 (-) 489 WP_078274630.1 hypothetical protein -
  LP088_RS13395 (LP088_13275) - 2617543..2619315 (-) 1773 WP_112741730.1 sodium:solute symporter family protein -
  LP088_RS13400 (LP088_13280) - 2619318..2619626 (-) 309 WP_078274632.1 DUF4212 domain-containing protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 61936.17 Da        Isoelectric Point: 5.0575

>NTDB_id=631609 LP088_RS13375 WP_078274627.1 2613666..2615375(-) (pilB) [Moraxella bovis strain SAM109238]
MSAPNFGGLAHILVSNGLVAPDAMTKALTEAQQQSMAIVPYLVENKVAPANKIASLLAHEFGDPLFDLNALSPDAVNKEL
VDEKIINQYGALPLFKRGNKLFVGLSDPTRLDAIDAISFNAKLTVETIVVEEDKLKKMIENVYSGGGGLGNLGDVDLSGD
FDGGSGDEDDEGADVNSGGGEDAPVVKFVNKMLLDAIRMGASDLHFEPYEKSYRVRFRVDGVLQIINRPPVQLAGKIAAR
LKVMSQMDISERRAPQDGRIKLKISKTKAIDFRVNSCPTLFGEKLVLRILDPSSAMLGIDALGYEPDQKELFLEALDKPQ
GMLLITGPTGSGKTVSLYTGLNILNTPETNISTAEDPVEINLEGINQVNVNPKVGLTFASALKAFLRQDPDIVMVGEIRD
LETAEIAIKAAQTGHMVLSTLHTNSAPETLTRLRNMGVASFNIATSVNLVIAQRLARRLCKNCKKPTNVPKQSLLEMGFT
EEDLANPDNVIYEPVGCSECREGYKGRVGIYEVMKIYPSIARIIMEDGNAIQIKDEAMKHGFRDLRRSGIMKVLQGTTSI
QEMYRVTSE

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=631609 LP088_RS13375 WP_078274627.1 2613666..2615375(-) (pilB) [Moraxella bovis strain SAM109238]
ATGTCCGCTCCGAATTTTGGTGGTTTGGCACACATTTTGGTGTCAAATGGCTTGGTTGCCCCTGATGCCATGACCAAGGC
TCTGACCGAAGCCCAGCAGCAAAGCATGGCGATTGTGCCATATTTGGTAGAAAACAAAGTTGCCCCTGCAAATAAGATTG
CCAGTCTGCTTGCTCATGAATTTGGCGACCCATTATTTGACCTAAATGCACTGTCTCCTGATGCGGTCAATAAAGAGCTG
GTTGATGAGAAAATCATTAATCAGTATGGGGCATTGCCACTCTTTAAACGGGGTAATAAACTTTTTGTGGGTTTGTCCGA
CCCCACCCGTCTAGATGCCATTGATGCCATCTCCTTTAACGCCAAGCTGACTGTTGAGACCATCGTTGTCGAAGAAGACA
AGCTCAAAAAGATGATTGAGAATGTCTACTCAGGCGGTGGCGGACTGGGCAACCTAGGCGATGTTGACCTGTCAGGGGAC
TTTGATGGTGGGTCAGGTGATGAAGATGATGAAGGTGCTGACGTCAATTCAGGCGGTGGTGAAGATGCCCCTGTGGTCAA
GTTCGTTAATAAAATGCTCCTTGATGCCATTCGTATGGGAGCATCGGATTTGCACTTTGAGCCGTATGAGAAGTCTTACC
GTGTGCGTTTTCGTGTGGATGGGGTTTTGCAAATCATTAATCGCCCACCAGTACAACTGGCAGGTAAAATCGCCGCTCGT
CTTAAAGTCATGTCGCAAATGGACATATCCGAACGCCGAGCTCCCCAGGATGGTCGTATTAAGCTAAAAATCTCCAAAAC
AAAAGCCATTGACTTTCGTGTGAACTCCTGCCCTACGCTCTTTGGCGAAAAGCTCGTACTGCGTATTCTTGACCCGTCAT
CAGCGATGCTTGGTATTGATGCACTCGGCTATGAGCCTGACCAAAAAGAGCTGTTCTTAGAAGCTCTTGATAAACCTCAA
GGCATGCTACTTATCACAGGTCCGACAGGTTCGGGTAAAACGGTCTCGCTCTATACTGGTCTTAACATCCTAAATACGCC
CGAGACCAACATCTCTACCGCCGAAGACCCTGTGGAAATTAACTTAGAAGGGATTAACCAAGTAAACGTCAACCCCAAAG
TGGGTCTCACGTTCGCCTCCGCCCTAAAAGCATTCCTACGTCAAGACCCTGACATCGTCATGGTCGGTGAGATTCGTGAT
TTGGAGACTGCCGAGATTGCCATTAAAGCCGCCCAAACGGGACACATGGTATTATCCACCCTGCACACCAACTCCGCTCC
TGAGACCCTAACTCGTCTGCGTAATATGGGCGTGGCATCGTTTAACATTGCCACATCGGTAAACCTAGTGATTGCCCAGC
GTCTGGCTCGCCGTTTGTGCAAAAACTGCAAAAAGCCGACCAACGTACCTAAGCAGAGCCTGCTAGAAATGGGCTTTACC
GAAGAAGATCTTGCCAATCCTGATAACGTCATCTATGAGCCTGTGGGCTGTTCTGAGTGTCGTGAAGGCTACAAGGGGCG
TGTGGGTATCTATGAAGTCATGAAAATCTACCCAAGTATCGCTCGGATTATCATGGAAGACGGTAATGCCATTCAAATCA
AAGACGAAGCGATGAAACACGGCTTTCGTGATTTGAGACGCTCGGGTATCATGAAAGTCTTGCAAGGCACGACCAGTATC
CAAGAGATGTATCGGGTAACTTCTGAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(42-145)

Type II/IV secretion system protein (T2SSE)

(191-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

67.135

100

0.671
  pilB Acinetobacter baylyi ADP1

65.554

100

0.656
  pilB Legionella pneumophila strain ERS1305867

52.575

98.946

0.52
  pilF Neisseria gonorrhoeae MS11

51.163

98.243

0.503
  pilB Vibrio cholerae strain A1552

49.554

98.594

0.489
  pilB Vibrio parahaemolyticus RIMD 2210633

48.41

99.473

0.482
  pilB Vibrio campbellii strain DS40M4

47.703

99.473

0.475
  pilB/pilB1 Synechocystis sp. PCC 6803

35.877

100

0.388
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.633

99.473

0.374
  pilF Thermus thermophilus HB27

36.442

100

0.371