Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LO769_RS10985 Genome accession   NZ_CP087600
Coordinates   2159385..2159816 (-) Length   143 a.a.
NCBI ID   WP_080585155.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IBB109     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2154385..2164816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO769_RS10950 (LO769_10945) - 2155287..2156096 (-) 810 WP_014570791.1 metal ABC transporter permease -
  LO769_RS10955 (LO769_10950) - 2156089..2156826 (-) 738 WP_058221575.1 metal ABC transporter ATP-binding protein -
  LO769_RS10960 (LO769_10955) - 2157003..2157845 (-) 843 WP_003129990.1 metal ABC transporter substrate-binding protein -
  LO769_RS10965 (LO769_10960) - 2157842..2158279 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  LO769_RS10970 (LO769_10965) comGG 2158385..2158669 (-) 285 WP_003129993.1 competence type IV pilus minor pilin ComGG Machinery gene
  LO769_RS10975 (LO769_10970) comGF 2158708..2159154 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  LO769_RS10980 (LO769_10975) comGE 2159117..2159413 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  LO769_RS10985 (LO769_10980) comGD 2159385..2159816 (-) 432 WP_080585155.1 competence type IV pilus minor pilin ComGD Machinery gene
  LO769_RS10990 (LO769_10985) comGC 2159776..2160159 (-) 384 WP_081040865.1 competence type IV pilus major pilin ComGC Machinery gene
  LO769_RS10995 (LO769_10990) comGB 2160173..2161246 (-) 1074 WP_014570824.1 competence type IV pilus assembly protein ComGB Machinery gene
  LO769_RS11000 (LO769_10995) comGA 2161140..2162079 (-) 940 Protein_2136 competence type IV pilus ATPase ComGA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16534.53 Da        Isoelectric Point: 9.6891

>NTDB_id=630379 LO769_RS10985 WP_080585155.1 2159385..2159816(-) (comGD) [Lactococcus lactis subsp. lactis strain IBB109]
MIRTKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVAVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=630379 LO769_RS10985 WP_080585155.1 2159385..2159816(-) (comGD) [Lactococcus lactis subsp. lactis strain IBB109]
ATGATCAGAACAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACAACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

66.434

100

0.664
  comYD Streptococcus gordonii str. Challis substr. CH1

39.716

98.601

0.392
  comYD Streptococcus mutans UA140

40.625

89.51

0.364
  comYD Streptococcus mutans UA159

40.625

89.51

0.364