Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   N596_RS08980 Genome accession   NC_022584
Coordinates   1891339..1892838 (+) Length   499 a.a.
NCBI ID   WP_023022220.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1886339..1897838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS08970 (N596_09235) amiA3 1887133..1889097 (+) 1965 WP_023027699.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08975 (N596_09240) amiA3 1889289..1891274 (+) 1986 WP_023027700.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08980 (N596_09245) amiC 1891339..1892838 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  N596_RS08985 (N596_09250) amiD 1892838..1893764 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  N596_RS08990 (N596_09255) amiE 1893776..1894843 (+) 1068 WP_023022224.1 ABC transporter ATP-binding protein Regulator
  N596_RS08995 (N596_09260) amiF 1894853..1895776 (+) 924 WP_023022226.1 ATP-binding cassette domain-containing protein Regulator
  N596_RS09000 (N596_09265) metG 1895877..1896254 (+) 378 Protein_1762 methionine--tRNA ligase subunit beta -
  N596_RS09005 (N596_09270) - 1896471..1896677 (-) 207 WP_003006064.1 helix-turn-helix transcriptional regulator -
  N596_RS09010 (N596_09275) - 1896688..1897209 (-) 522 WP_023022517.1 DUF2975 domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55662.93 Da        Isoelectric Point: 10.0795

>NTDB_id=62985 N596_RS08980 WP_023022220.1 1891339..1892838(+) (amiC) [Streptococcus ilei]
MKKYIFMRILRSLVSIFLVTTLTYTIIYTLTPRNLIFKNDPNYNKIAKTKDSKINYENTVYDRMGYIEYLDSKALKEKAS
KEDSSVTVEPTKENEKIYKKYISNLGNGWVLKRFPENKGFYATREVPVFERVIGFYGNLIQIDHPNVIKDASNPKLERYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFIHQNFVSLNLGESYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKESSI
NIYSRTYKSPSKADAQDIARFGKGDAYTATLSNYENPSMIVSSAIIGLIGIAIAYLIAIPLGSYMALLKNTWFDSASTAT
LTFMMSLPTIALVYIVRLAGSSIGLPDSFPVLGAQDWRSYVLPSVILGLLSAPGLAVWIRRYMIDLHSQDFVRFARAKGL
SEKEISRKHIFKNAMVPIVTGIPVQLVLVISGATLTETVFAFPGMGKMLIDSIKASNNTMVVGLVFIFTVLAVFGAMAGD
ILMVMVDPRIKLTTKKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=62985 N596_RS08980 WP_023022220.1 1891339..1892838(+) (amiC) [Streptococcus ilei]
ATGAAAAAATATATATTTATGCGTATTTTACGTTCGTTGGTGTCGATCTTTTTGGTTACGACATTGACGTATACAATTAT
TTATACGCTAACCCCAAGAAATTTAATTTTCAAAAACGACCCTAACTATAACAAGATTGCGAAAACAAAAGACTCTAAAA
TCAATTATGAAAATACAGTCTATGATCGCATGGGGTATATAGAATATCTTGATTCAAAAGCTTTGAAAGAAAAAGCAAGC
AAGGAAGACTCATCAGTAACAGTAGAGCCTACTAAAGAAAACGAGAAGATCTACAAAAAGTACATTTCTAACCTTGGAAA
TGGCTGGGTATTGAAACGTTTCCCTGAAAACAAAGGTTTTTACGCTACTCGTGAAGTCCCTGTCTTTGAACGTGTTATTG
GATTCTATGGTAATCTGATTCAGATTGACCATCCAAATGTCATCAAAGATGCTTCTAATCCAAAACTTGAACGCTATATT
CGAATTGAAAATGACCCAGCTATTGGTTGGTCAGTAGTTGGTTCGGGGACTAAACATAAATATCTTTTGTATTTCAATGG
TCAATTCCCGTTCATTCATCAAAATTTTGTATCCTTAAACTTGGGTGAATCTTACCCAACTTATTCAAATACACCTGTTC
TTCAGGTTATTACACAAGGACAAGGTACAACTAAGAAGAGTGAAGTAAACTTCCCAACAGGAAAAAAAGAATCTTCTATC
AATATCTACTCTCGTACATACAAATCACCAAGCAAGGCAGATGCTCAAGATATCGCCCGCTTTGGTAAAGGAGATGCTTA
TACAGCAACATTGAGCAACTATGAAAATCCATCCATGATTGTGAGCTCAGCCATTATCGGTTTAATCGGGATTGCGATTG
CCTACTTGATTGCTATTCCTTTAGGATCTTATATGGCCTTGTTGAAGAATACTTGGTTTGATAGTGCATCTACGGCAACT
TTAACATTTATGATGTCATTGCCGACGATTGCCTTGGTTTACATCGTTCGCTTGGCTGGCTCTTCTATCGGCTTACCAGA
TTCCTTCCCAGTGTTAGGGGCTCAGGATTGGCGCTCTTATGTACTACCTTCTGTGATTTTGGGTCTCTTGAGTGCACCAG
GATTGGCAGTTTGGATTCGCCGTTACATGATCGACTTGCATTCTCAAGACTTTGTCCGTTTTGCACGTGCCAAAGGGCTT
TCTGAGAAAGAAATTTCCCGCAAACATATCTTCAAAAACGCCATGGTTCCGATCGTTACAGGGATTCCTGTTCAATTGGT
TCTAGTCATTTCAGGGGCAACTTTGACAGAAACTGTCTTTGCCTTCCCTGGTATGGGTAAAATGTTGATTGATTCTATCA
AGGCATCCAATAATACCATGGTAGTTGGTCTTGTCTTCATCTTTACTGTTCTTGCTGTATTTGGAGCAATGGCTGGAGAT
ATCCTTATGGTTATGGTAGACCCTCGTATCAAACTAACAACTAAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

72.745

100

0.727
  amiC Streptococcus thermophilus LMD-9

72.345

100

0.723
  amiC Streptococcus thermophilus LMG 18311

72.345

100

0.723

Multiple sequence alignment