Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N596_RS08975 Genome accession   NC_022584
Coordinates   1889289..1891274 (+) Length   661 a.a.
NCBI ID   WP_023027700.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884289..1896274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS08960 (N596_09225) - 1884923..1885496 (+) 574 Protein_1754 hypothetical protein -
  N596_RS08965 (N596_09230) pbp3 1885716..1886948 (-) 1233 WP_196805883.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N596_RS08970 (N596_09235) amiA3 1887133..1889097 (+) 1965 WP_023027699.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08975 (N596_09240) amiA3 1889289..1891274 (+) 1986 WP_023027700.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08980 (N596_09245) amiC 1891339..1892838 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  N596_RS08985 (N596_09250) amiD 1892838..1893764 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  N596_RS08990 (N596_09255) amiE 1893776..1894843 (+) 1068 WP_023022224.1 ABC transporter ATP-binding protein Regulator
  N596_RS08995 (N596_09260) amiF 1894853..1895776 (+) 924 WP_023022226.1 ATP-binding cassette domain-containing protein Regulator
  N596_RS09000 (N596_09265) metG 1895877..1896254 (+) 378 Protein_1762 methionine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73149.18 Da        Isoelectric Point: 4.8739

>NTDB_id=62984 N596_RS08975 WP_023027700.1 1889289..1891274(+) (amiA3) [Streptococcus ilei]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYTDDPTTLDYTVSSKASVHDITTNGVDGLLENDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSESLPLVKDSIKGLKDYSEGKISDFS
EVGVKAIDDYTLEYTLNQPETFWNSKTTNGVLFPISTEFLKSKGDEFGQPGNVKSILFNGPFLLKSITSKSEITFEKNED
YWDKDNVHIDKIKLSYYDGSDQDSIARGFSDGSYTKARLYPASSNFASVEEKYKDNIYNTQPGSGVAVLGFNIDRQAYNH
TSKTSDEQKSSTKKAILNKNFRQAITFALNRENYSAQVNGKEYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADSQNGLYSKEKAKAQFEKAKAELQKEGVQFPIHLDVPVAQNSTNFVSRMQSFKQSVEETLGTENVVVDLQMMDQ
DEVLNITLNVPSAAETDWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFAGGVDNASAKAVGLDEYAKLLDDAEK
ETLDVVTRYEKFAAAQAWLTDSALVIPTMTSSGAATVVSKVVPFSEPSSQTGNKGSTYFKYVEIQDEPVTKKQYDQAREK
WLKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=62984 N596_RS08975 WP_023027700.1 1889289..1891274(+) (amiA3) [Streptococcus ilei]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTGCTCGCAGCAACTTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACGTATGGCTATGTTTATACAGATGATCCTACAACTTTGGATTACACCG
TATCTTCAAAAGCTTCCGTACACGATATTACAACAAACGGTGTAGATGGTTTGTTGGAAAATGACAAATACGGAAACCTT
GTGCCATCTATTGCTGAGGATTGGTCTGTTTCAAAAGACGGCTTGACCTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCCGACGGCGAAGAGCATGGTGAAGTAACAGCTCATGACTTTGTTACTGGATTGAAGCATGCGGCAGACAAGA
AATCAGAATCTCTTCCATTGGTGAAAGACTCAATCAAAGGATTGAAAGACTACTCAGAAGGAAAAATTTCAGATTTCTCC
GAGGTTGGGGTCAAAGCAATAGATGATTATACACTTGAGTATACTTTGAATCAACCAGAAACTTTTTGGAATTCAAAAAC
AACTAATGGAGTTCTTTTCCCAATTAGTACAGAATTCTTGAAGAGCAAGGGTGATGAATTTGGTCAACCTGGTAATGTCA
AATCAATCTTGTTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATCACTTTTGAAAAGAACGAAGAT
TACTGGGATAAAGACAACGTTCATATTGACAAGATTAAATTGTCTTATTATGATGGATCAGATCAAGATTCCATAGCGCG
CGGTTTTAGCGATGGTTCATATACCAAGGCGCGTCTATACCCTGCTAGCTCTAACTTTGCGTCTGTTGAAGAAAAATACA
AAGACAATATCTACAACACACAGCCTGGTTCTGGTGTCGCAGTCTTAGGTTTCAACATTGACCGTCAAGCTTACAACCAT
ACTTCTAAGACGTCAGATGAGCAGAAATCTTCTACGAAGAAAGCTATCTTGAACAAGAATTTCCGTCAAGCTATCACCTT
TGCCTTGAACCGCGAAAATTATTCAGCGCAAGTCAATGGTAAAGAGTATGCTAAGGCTGCTATTCGGAATATGTACACTG
CACCTGCCTTTGTTCAAGTAAACGGTAAAGACTTTGGTGATGTAGTAGCAGACAAGTTGCAAACTTATGGGGATCAATGG
AGCGGTGTGAATCTTGCAGACAGTCAAAACGGACTCTATAGCAAGGAAAAAGCAAAAGCTCAGTTTGAAAAGGCAAAAGC
TGAACTCCAAAAAGAGGGTGTTCAATTCCCAATCCACTTGGATGTTCCGGTTGCACAAAACTCAACAAACTTTGTGTCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGAAACACTTGGTACAGAAAACGTTGTTGTGGACCTTCAAATGATGGACCAA
GATGAAGTCTTGAACATTACTCTTAACGTACCATCAGCTGCAGAAACTGACTGGGACCTTCAAGGACTTGTAGGATGGAA
TCCAGACTATGATGACCCATCTACTTACCTTGATACCTTGCAACCATCTTCTCCAGACCAAACTAAGACTTATCTTGGAT
TTGCTGGTGGTGTCGATAATGCCTCTGCTAAGGCTGTTGGCTTAGATGAATATGCGAAGTTGCTTGATGATGCAGAAAAA
GAAACCCTAGACGTAGTGACACGTTATGAAAAATTTGCAGCAGCGCAAGCTTGGTTAACAGATAGCGCATTGGTAATTCC
AACTATGACAAGCTCTGGTGCAGCTACAGTGGTTTCAAAAGTGGTTCCATTCTCTGAACCTTCATCACAAACAGGTAACA
AAGGATCAACTTATTTCAAATATGTTGAAATTCAAGATGAACCTGTCACTAAAAAACAATATGATCAAGCACGTGAAAAA
TGGTTGAAAGAAAAAGCTGAATCAAACAAGAAGGCTCAGCAAGATCTTGAAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.276

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

58.824

100

0.59
  amiA Streptococcus salivarius strain HSISS4

58.459

100

0.585

Multiple sequence alignment