Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N596_RS08970 Genome accession   NC_022584
Coordinates   1887133..1889097 (+) Length   654 a.a.
NCBI ID   WP_023027699.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1882133..1894097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS08950 (N596_09215) sufU 1882912..1883346 (+) 435 WP_023027698.1 Fe-S cluster assembly sulfur transfer protein SufU -
  N596_RS08955 (N596_09220) sufB 1883491..1884903 (+) 1413 WP_023022212.1 Fe-S cluster assembly protein SufB -
  N596_RS08960 (N596_09225) - 1884923..1885496 (+) 574 Protein_1754 hypothetical protein -
  N596_RS08965 (N596_09230) pbp3 1885716..1886948 (-) 1233 WP_196805883.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N596_RS08970 (N596_09235) amiA3 1887133..1889097 (+) 1965 WP_023027699.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08975 (N596_09240) amiA3 1889289..1891274 (+) 1986 WP_023027700.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08980 (N596_09245) amiC 1891339..1892838 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  N596_RS08985 (N596_09250) amiD 1892838..1893764 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72745.78 Da        Isoelectric Point: 4.8074

>NTDB_id=62983 N596_RS08970 WP_023027699.1 1887133..1889097(+) (amiA3) [Streptococcus ilei]
MKVNKRFVLAGVSLASALLLTACGGGSSNQSTYSYIYSTDPNTLDYIASTRTTTSDITSNLVDGLLENDKYGNLIPSLAE
DWTVSEDGLVYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVEAKSEGLFLIQNSIKGLDAFVKGETKDFNTVGVKA
LDDYTVQYTLERPESFWNSKTTSGVLFPVNKAFLESQGKDFGSLKPSSILYNGPYYLKNLTSKSQIELVKNKEYYDEKNV
HIDHVKLTYNDGSDPESVIKKFENGQYSFATVMPNSSTYKSVKKKFGDNIVYGVQYGTSYYLGFNIDRQKYNHTAKTTDA
QKSSTKQAILNKDFRQAVNFAFDREAYAAQTSGADAATKILRNTLVPPTFVQVNGEEFGKVVEKQLVTYGDEWKDVNLDD
AQTTLYNQEKAKTEFAKAKEQLQKEGVEFPIHLDYVVSQTDNSQVQQASSFKQSVEAVLGADNVVVDIQKLSDDDFNNIT
YFTDTAAEKDYDLAGGGWVPDYQDPSTYLESLSPVNGSVFYYLGVDAGSNSPAIPAVDFGKYAELLKDANAEVNDQAVRY
EKYAAAQAWLTDSSLILPTVSNGGTPMLQRTVPYSRAASWVGTKGTGTNYKYLELSEEVIKTKDYDASKEKWLKEKTESN
KKAQEELKNHIESK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=62983 N596_RS08970 WP_023027699.1 1887133..1889097(+) (amiA3) [Streptococcus ilei]
ATGAAAGTAAATAAACGGTTCGTACTGGCCGGTGTTTCTCTAGCCAGTGCTCTTCTATTGACAGCCTGTGGCGGTGGAAG
TAGCAATCAATCTACTTATTCTTATATTTATTCAACAGATCCAAATACTTTGGACTACATTGCCTCGACTCGTACAACAA
CGTCTGATATTACAAGTAACCTTGTTGATGGTTTGTTAGAAAATGATAAATATGGAAATTTAATCCCAAGTTTGGCAGAA
GACTGGACTGTTTCGGAAGATGGCTTGGTGTATACCTATAAACTTCGAAAAGATGCAAAATGGTATACCAGTGAGGGAGA
AGAGTATGGTGCTGTAACAGCCCAGGACTTTGTGACAGGTATCAAACACGCTGTGGAAGCAAAATCTGAGGGTCTTTTCT
TAATCCAAAATTCGATTAAAGGCTTAGATGCATTTGTCAAAGGTGAAACAAAAGATTTCAATACAGTTGGCGTGAAAGCC
CTAGATGATTATACCGTTCAATATACCTTGGAACGTCCAGAAAGTTTTTGGAATTCTAAGACGACCTCAGGCGTCCTCTT
CCCGGTTAACAAAGCTTTCTTAGAATCTCAAGGGAAAGACTTCGGTTCTTTGAAGCCAAGTAGTATTCTCTATAATGGTC
CTTATTATTTGAAGAATTTAACTTCAAAATCGCAGATTGAACTTGTGAAAAATAAGGAATATTATGATGAAAAGAATGTT
CATATTGATCATGTGAAGTTGACCTATAATGACGGATCAGATCCAGAATCTGTCATCAAGAAATTTGAGAATGGACAATA
TTCATTTGCGACAGTAATGCCAAATAGCTCCACTTATAAGAGTGTAAAAAAGAAATTTGGTGATAATATTGTTTATGGTG
TTCAATACGGAACATCATACTACCTCGGATTCAACATTGATCGTCAGAAGTATAACCATACAGCCAAAACAACAGATGCT
CAGAAATCGTCCACAAAACAAGCGATTTTAAACAAAGACTTCCGTCAAGCTGTAAACTTTGCCTTTGACCGTGAAGCCTA
TGCAGCTCAAACATCGGGAGCAGATGCGGCGACCAAGATTCTTCGGAATACCTTGGTTCCACCGACTTTTGTTCAAGTAA
ATGGAGAAGAGTTCGGTAAGGTTGTTGAGAAACAATTGGTGACCTATGGAGATGAGTGGAAAGATGTAAATCTAGATGAT
GCCCAAACCACTCTCTACAATCAAGAAAAAGCCAAGACTGAGTTTGCAAAAGCTAAAGAACAACTGCAAAAAGAAGGGGT
AGAATTCCCAATTCATTTGGATTACGTTGTCAGTCAAACGGATAACAGTCAGGTACAACAAGCTAGCTCCTTTAAACAAT
CCGTAGAAGCTGTTCTCGGTGCAGACAATGTTGTCGTAGATATTCAGAAATTATCTGATGATGACTTTAACAATATTACC
TATTTCACAGATACTGCTGCTGAGAAAGATTATGACCTTGCAGGAGGTGGATGGGTTCCAGACTACCAAGATCCATCTAC
TTATTTAGAGAGCTTAAGTCCTGTTAACGGTTCTGTTTTCTACTATCTAGGTGTGGATGCAGGCTCAAACAGTCCTGCTA
TTCCAGCAGTTGACTTTGGGAAGTATGCAGAACTATTAAAAGATGCCAATGCTGAAGTGAATGATCAAGCTGTACGCTAT
GAGAAATACGCAGCTGCTCAAGCATGGCTAACCGATAGTTCATTGATCTTGCCGACTGTTTCAAATGGTGGAACTCCAAT
GTTGCAACGGACTGTTCCATATAGTCGTGCGGCTTCATGGGTTGGAACAAAAGGAACTGGAACCAACTATAAATATCTTG
AACTTTCAGAAGAAGTCATCAAGACAAAGGATTACGATGCAAGCAAAGAAAAATGGTTAAAAGAAAAGACTGAATCCAAT
AAAAAAGCTCAAGAAGAATTAAAGAACCACATCGAATCGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.636

100

0.541
  amiA3 Streptococcus thermophilus LMG 18311

53.182

100

0.537
  amiA Streptococcus salivarius strain HSISS4

53.111

100

0.535

Multiple sequence alignment