Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   N596_RS08985 Genome accession   NC_022584
Coordinates   1892838..1893764 (+) Length   308 a.a.
NCBI ID   WP_023022222.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1887838..1898764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS08975 (N596_09240) amiA3 1889289..1891274 (+) 1986 WP_023027700.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08980 (N596_09245) amiC 1891339..1892838 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  N596_RS08985 (N596_09250) amiD 1892838..1893764 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  N596_RS08990 (N596_09255) amiE 1893776..1894843 (+) 1068 WP_023022224.1 ABC transporter ATP-binding protein Regulator
  N596_RS08995 (N596_09260) amiF 1894853..1895776 (+) 924 WP_023022226.1 ATP-binding cassette domain-containing protein Regulator
  N596_RS09000 (N596_09265) metG 1895877..1896254 (+) 378 Protein_1762 methionine--tRNA ligase subunit beta -
  N596_RS09005 (N596_09270) - 1896471..1896677 (-) 207 WP_003006064.1 helix-turn-helix transcriptional regulator -
  N596_RS09010 (N596_09275) - 1896688..1897209 (-) 522 WP_023022517.1 DUF2975 domain-containing protein -
  N596_RS09015 (N596_09280) - 1897385..1897927 (+) 543 WP_023027530.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34548.46 Da        Isoelectric Point: 9.7758

>NTDB_id=62986 N596_RS08985 WP_023022222.1 1892838..1893764(+) (amiD) [Streptococcus ilei]
MSTIDKKKFQFVERDDFASETIDAPSYSYWKSVFRQFFKKKSTILMLAVLVAILLMSFVYPMFSNFDYNDVSKVNDFTAR
LNPPSTKAFFGTDNNGKSLFDGVWFGARNSIIISFIATLINVVIGVVIGGIWGVSKSIDRFMMEVYNVISNVPFMLIVIV
LTYSIGAGFWNLILAMTVTGWIGIAYSIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTTTTQLLPAFIS
TEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLVLVSLSFYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=62986 N596_RS08985 WP_023022222.1 1892838..1893764(+) (amiD) [Streptococcus ilei]
ATGTCTACAATCGATAAGAAGAAATTCCAATTTGTGGAACGTGATGATTTTGCCTCTGAGACAATTGATGCGCCGTCTTA
CTCCTATTGGAAATCCGTATTCCGTCAATTCTTCAAAAAGAAATCAACCATTTTGATGTTAGCCGTTTTGGTTGCTATTC
TCTTAATGAGTTTTGTATACCCAATGTTTTCAAACTTTGATTACAATGATGTAAGTAAAGTAAATGACTTTACTGCCCGT
TTGAATCCGCCAAGCACCAAGGCCTTCTTTGGTACGGATAACAATGGTAAATCCTTGTTTGATGGAGTTTGGTTTGGTGC
CCGCAATTCGATTATCATCTCCTTTATTGCTACCTTGATCAACGTTGTGATTGGAGTAGTGATCGGCGGGATTTGGGGTG
TGTCAAAATCAATCGACCGCTTCATGATGGAAGTTTATAACGTTATTTCAAATGTTCCATTCATGTTGATTGTTATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAACTTGATTTTGGCGATGACAGTGACAGGATGGATTGGGATTGCTTACTC
TATCCGTGTCCAAATTATGCGTTACCGCGATTTAGAGTACAACTTGGCCAGTCGCACCTTGGGTACACCAACCCTTAAAA
TTGTGACGAAAAATATTTTGCCACAGTTGGTTTCTGTTATTGTGACGACAACTACACAATTGTTGCCAGCCTTTATTTCG
ACTGAGGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCGATTACAGTTCCAAGTTTAGGTCGTCTTATTTCAGACTACTC
ACAAAACGTAACAACCAATGCGTATCTTTTCTGGATTCCATTGACAGTCTTAGTCTTGGTATCCTTGTCATTCTATATCG
TTGGACAAAATCTTGCAGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.597

100

0.776
  amiD Streptococcus thermophilus LMG 18311

76.299

100

0.763
  amiD Streptococcus thermophilus LMD-9

76.299

100

0.763

Multiple sequence alignment