Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   N597_RS08715 Genome accession   NC_022582
Coordinates   1847134..1849287 (-) Length   717 a.a.
NCBI ID   WP_023024761.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842134..1854287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS08700 (N597_08950) - 1842242..1845037 (-) 2796 WP_023024753.1 YhgE/Pip domain-containing protein -
  N597_RS08705 (N597_08955) - 1845173..1845709 (+) 537 WP_023024755.1 TetR/AcrR family transcriptional regulator -
  N597_RS08710 (N597_08960) comB 1845746..1847107 (-) 1362 WP_052329298.1 bacteriocin secretion accessory protein Regulator
  N597_RS08715 (N597_08965) comA 1847134..1849287 (-) 2154 WP_023024761.1 peptide cleavage/export ABC transporter ComA Regulator
  N597_RS08720 (N597_08970) rpsD 1849571..1850182 (-) 612 WP_003009175.1 30S ribosomal protein S4 -
  N597_RS08725 (N597_08975) - 1850756..1851028 (-) 273 WP_006595358.1 Veg family protein -
  N597_RS08730 (N597_08980) dnaB 1851032..1852387 (-) 1356 WP_023024763.1 replicative DNA helicase -
  N597_RS08735 (N597_08985) rplI 1852412..1852864 (-) 453 WP_023024764.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80998.61 Da        Isoelectric Point: 8.7580

>NTDB_id=62927 N597_RS08715 WP_023024761.1 1847134..1849287(-) (comA) [Streptococcus ilei]
MGFKKKHYRQQVDMRDCGVAALAMVFGYYGSYYSLASLREKAKTTADGTTALGLVKVAEELGFETRAFRADRTLFDLEGV
TYPLIVHVIKDGRLPHYYVVYKKDKKHLYVADPDPKVKMTKLTIEEFEKEWTGIVIALAPTPAYQPSKEKKNGLLDFVPL
LFKQRQLVLHIVLATLLVTLINIVGSYYLQSIIDTYVPDQMKQTLTVISLGLIVVYILQQILTYAQDYLLLVLGQRLSID
VILSYIKHVFRLPMSFFATRRTGEVVSRFTDANRIIDALASTLLSIFLDLSIVLILSVVLFSQNAHLFFLTILLLPIYAV
IIFAFMKPFERLNNETMEANSVLSSSIIEDINGIETIKSLTSERSRYQKIDSEFVDYLKKSFAMSKAESLQKGLKHLAQL
ILNVLVLWMGAHLVMKQELSLGQLITYNTLLVYFTGPLENLINLQTKLQAARVANTRLNEVYLIDSEFAEKKPLQEREAL
DGDLVFEGVDYKYGFGANVLTDINLTIKKGSKVSFVGISGSGKTTLAKMMVNFYQPTKGTIRLGGRDIQQVDKTLLRQQI
NYLPQQPYVFNGTILENLLLGAREGTSQEDILRAVEIAGIREDIERMPLNYQTELTTDGMGISGGQRQRIALARALLTDA
PILILDEATSSLDILTEKKIVDRLMALDKTIIFIAHRLTIAERSEKVFLMDQGRLKEEGSHEELLKKNGYYSHLVTC

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=62927 N597_RS08715 WP_023024761.1 1847134..1849287(-) (comA) [Streptococcus ilei]
ATGGGATTTAAGAAAAAACATTATCGCCAACAAGTTGACATGAGAGACTGTGGTGTTGCAGCTTTAGCCATGGTCTTTGG
CTACTATGGATCATACTATTCTTTAGCTAGTCTGCGGGAGAAGGCAAAAACGACTGCAGATGGAACGACCGCCTTAGGTT
TGGTCAAGGTAGCTGAAGAGTTGGGCTTTGAGACACGCGCCTTCCGAGCAGACCGCACTCTTTTTGACTTAGAAGGAGTG
ACCTATCCATTGATTGTCCACGTGATCAAGGATGGGCGTCTCCCTCATTATTACGTAGTGTATAAGAAAGATAAAAAACA
TCTTTACGTAGCAGATCCAGATCCAAAAGTAAAGATGACCAAATTGACGATCGAAGAGTTTGAAAAGGAATGGACAGGGA
TTGTCATTGCCTTGGCCCCGACTCCGGCCTATCAACCTAGTAAGGAAAAGAAAAATGGGCTCCTAGACTTTGTCCCTCTT
TTGTTTAAACAGCGACAATTGGTCCTTCATATTGTTCTTGCAACTTTATTGGTAACCCTTATCAATATTGTTGGTTCTTA
CTACCTACAATCAATTATTGATACCTATGTGCCTGATCAGATGAAGCAGACCTTGACTGTGATTTCACTAGGTTTGATTG
TGGTTTACATCTTACAGCAAATCCTCACCTACGCGCAAGATTACTTGCTCCTTGTTTTAGGCCAACGCTTGTCTATTGAT
GTCATTCTGTCCTATATTAAGCATGTTTTTCGGTTGCCTATGAGTTTCTTTGCAACTCGACGGACAGGGGAAGTGGTGTC
GCGTTTTACAGATGCCAACCGCATTATCGATGCTCTGGCTAGTACCTTGCTTTCAATCTTTTTGGATCTATCCATCGTCC
TGATTTTATCAGTAGTCCTGTTTAGTCAAAATGCTCATCTCTTTTTCTTGACCATTCTCTTGCTGCCGATTTATGCAGTC
ATTATTTTTGCCTTTATGAAGCCTTTTGAGCGCTTAAATAATGAAACTATGGAAGCCAATAGTGTCTTGTCTTCTTCTAT
TATCGAAGATATCAATGGGATTGAAACCATCAAGTCTCTTACCAGTGAGCGTAGTCGTTATCAAAAGATTGACTCAGAAT
TTGTGGATTATCTGAAGAAGTCCTTTGCCATGAGCAAGGCGGAAAGTCTTCAAAAGGGGCTCAAGCACTTGGCTCAGTTG
ATTTTGAATGTTTTGGTCTTGTGGATGGGAGCTCATTTGGTCATGAAGCAAGAATTGAGTTTGGGTCAGCTGATTACCTA
CAATACTCTCCTTGTTTATTTCACAGGGCCTCTAGAGAATTTGATCAACCTCCAAACCAAACTTCAAGCCGCCCGAGTAG
CTAATACCCGTCTGAATGAAGTCTATCTGATAGACTCTGAGTTCGCAGAGAAGAAGCCCCTTCAAGAGCGTGAGGCTCTC
GATGGTGATCTAGTATTTGAGGGAGTAGATTACAAGTACGGTTTCGGGGCCAATGTTCTAACGGATATCAATTTAACTAT
TAAAAAAGGTAGCAAGGTCAGTTTCGTCGGTATTTCAGGCTCTGGAAAAACAACGCTAGCAAAGATGATGGTGAATTTCT
ACCAACCCACTAAAGGAACGATTCGTCTGGGAGGAAGGGATATCCAGCAAGTGGATAAAACCTTGCTCCGCCAGCAAATC
AATTATTTACCCCAGCAGCCCTATGTCTTTAATGGCACAATATTAGAGAACTTGTTACTAGGAGCGCGGGAAGGAACTAG
TCAGGAAGATATCTTGCGCGCTGTTGAAATCGCAGGAATTCGAGAAGATATTGAGCGCATGCCCCTCAATTACCAAACGG
AATTAACAACGGATGGTATGGGAATTTCTGGTGGACAACGGCAGCGGATTGCTTTGGCGCGTGCTTTGTTAACGGATGCT
CCTATTCTGATTCTGGATGAAGCGACCAGCAGCCTAGATATCTTGACGGAGAAGAAAATTGTGGACCGCTTGATGGCCTT
AGATAAGACCATTATCTTTATCGCCCATCGGTTAACGATTGCAGAACGGTCTGAAAAAGTCTTCCTCATGGACCAAGGTC
GTCTTAAGGAAGAGGGAAGCCATGAAGAACTACTGAAAAAGAATGGCTATTACAGCCATTTAGTTACTTGTTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(6-142)

ABC transporter (ABC_tran)

(500-650)

ABC transporter transmembrane region (ABC_membrane)

(171-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

76.709

100

0.767
  comA Streptococcus mitis NCTC 12261

75.314

100

0.753
  comA Streptococcus pneumoniae Rx1

75.174

100

0.752
  comA Streptococcus pneumoniae D39

75.174

100

0.752
  comA Streptococcus pneumoniae R6

75.174

100

0.752
  comA Streptococcus mitis SK321

75.174

100

0.752
  comA Streptococcus pneumoniae TIGR4

74.756

100

0.748
  comA/nlmT Streptococcus mutans UA159

63.357

99.721

0.632

Multiple sequence alignment