Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LO004_RS02375 Genome accession   NZ_CP087331
Coordinates   496387..497445 (+) Length   352 a.a.
NCBI ID   WP_031950501.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491387..502445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS02360 - 492493..492825 (+) 333 WP_000598371.1 hypothetical protein -
  LO004_RS02365 - 492828..493652 (+) 825 WP_100223340.1 putative RNA methyltransferase -
  LO004_RS02370 ponA 493670..496225 (-) 2556 WP_000736680.1 penicillin-binding protein PBP1a -
  LO004_RS02375 pilM 496387..497445 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  LO004_RS02380 pilN 497445..498086 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  LO004_RS02385 pilO 498083..498823 (+) 741 WP_000076105.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO004_RS02390 pilP 498834..499361 (+) 528 WP_000695068.1 pilus assembly protein PilP Machinery gene
  LO004_RS02395 pilQ 499424..501589 (+) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  LO004_RS02400 aroK 501601..502170 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39014.55 Da        Isoelectric Point: 4.4618

>NTDB_id=628816 LO004_RS02375 WP_031950501.1 496387..497445(+) (pilM) [Acinetobacter baumannii strain LMG994]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPIGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=628816 LO004_RS02375 WP_031950501.1 496387..497445(+) (pilM) [Acinetobacter baumannii strain LMG994]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATAGGTGCAAATACCATAGGGATTTTAGATATCGGCCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTTTTTGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCCGAGCGAAAAAAGATCGCTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGCTCACTACAATTTTTCTTTTCCTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

99.716

100

0.997
  comM Acinetobacter nosocomialis M2

98.864

100

0.989
  comM Acinetobacter baylyi ADP1

81.25

100

0.813
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423