Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO004_RS02390 Genome accession   NZ_CP087331
Coordinates   498834..499361 (+) Length   175 a.a.
NCBI ID   WP_000695068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 493834..504361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS02375 pilM 496387..497445 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  LO004_RS02380 pilN 497445..498086 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  LO004_RS02385 pilO 498083..498823 (+) 741 WP_000076105.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO004_RS02390 pilP 498834..499361 (+) 528 WP_000695068.1 pilus assembly protein PilP Machinery gene
  LO004_RS02395 pilQ 499424..501589 (+) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  LO004_RS02400 aroK 501601..502170 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LO004_RS02405 aroB 502199..503281 (+) 1083 WP_001193995.1 3-dehydroquinate synthase -
  LO004_RS02410 - 503297..504172 (+) 876 WP_000218796.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19458.67 Da        Isoelectric Point: 8.9914

>NTDB_id=628819 LO004_RS02390 WP_000695068.1 498834..499361(+) (pilP) [Acinetobacter baumannii strain LMG994]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGHILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628819 LO004_RS02390 WP_000695068.1 498834..499361(+) (pilP) [Acinetobacter baumannii strain LMG994]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCACATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709